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[191950_at] alcohol/ribitol dehydrogenase

Description C10F3.2 /REP_DB=WormBase Gene ID /WP=CE08067 /TR=O16881 /GB=AAB69884.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=alcohol-ribitol dehydrogenase
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 81      6grp_total > 81      4grp_total > 49      6grp_highest_sub > 04_05      6grp_cgc > 86      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 67.7
(-3)
P 		212.8
(3)
P 		208.7
(2.8)
P 		116.3
(-1)
P 		145
B 75.9
(-3)
P 		213.3
(2.1)
P 		237.8
(3)
P 		83
(-2.7)
P 		162
C 88.7
(-3)
P 		171.3
(1.3)
P 		204.3
(3)
P 		91.8
(-2.8)
P 		116
avr 77.4
(-3) 		199.1
(2.2) 		216.9
(3) 		97
(-2.2) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 141.3
(-2.6)
P 		239
(-0.9)
P 		219.9
(-1.2)
P 		453.9
(3)
P 		405.2
(2.1)
P 		121.2
(-3)
P 		333
B 207.3
(-2.4)
P 		232.7
(-1.8)
P 		246.5
(-1.5)
P 		437.2
(3)
P 		417.2
(2.5)
P 		181.1
(-3)
P 		256
C 189.9
(-2.6)
P 		277.6
(-1)
P 		215.8
(-2.2)
P 		495.8
(3)
P 		318.8
(-0.3)
P 		170.6
(-3)
P 		325
avr 179.5
(-2.6) 		249.8
(-1.2) 		227.4
(-1.6) 		462.3
(3) 		380.4
(1.4) 		157.6
(-3) 		305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 24.6
(-1.8)
P 		46.2
(1.7)
P 		54.6
(3)
P 		17
(-3)
P 		38
B 24.2
(-2)
P 		52.7
(2.6)
P 		55.1
(3)
P 		17.7
(-3)
P 		37
C 29.4
(-1.5)
P 		49.3
(0.6)
P 		71.2
(3)
P 		15.5
(-3)
P 		56
avr 26.1
(-1.7) 		49.4
(1.5) 		60.3
(3) 		16.7
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 26
(-3)
P 		85
(0.7)
P 		47.9
(-1.6)
P 		115.1
(2.6)
P 		122.3
(3)
P 		29.5
(-2.8)
P 		96
B 72.1
(-2.3)
P 		77.5
(-2)
P 		59.9
(-3)
P 		115.8
(0.1)
P 		169.5
(3)
P 		67.5
(-2.6)
P 		110
C 70.4
(-1.1)
P 		84.7
(0.7)
P 		54.9
(-3)
P 		99.7
(2.6)
P 		103.2
(3)
P 		57.1
(-2.7)
P 		48
avr 56.2
(-2.6) 		82.4
(-0.7) 		54.2
(-2.8) 		110.2
(1.4) 		131.7
(3) 		51.4
(-3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191950_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11908
Sequence Type Exemplar sequence
Representative Public ID C10F3.2 NCBI
Target Description C10F3.2 /REP_DB=WormBase Gene ID /WP=CE08067 /TR=O16881 /GB=AAB69884.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=alcohol-ribitol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072153(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072153 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-16) (dhs-16) mRNA, complete cds. 11/11 None
SNAP00000029257 ENSEMBL cdna:SNAP chromosome:CEL140:V:5986340:5987930:1 11/11 None
GENEFINDER00000029263 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5986340:5987930:1 11/11 None
C10F3.2 ENSEMBL cdna:known chromosome:CEL140:V:5986339:5988067:1 gene:C10F3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5986339-5987930(+) 100.0 100.0
Public Domain and Genome References
Gene Title alcohol/ribitol dehydrogenase
Gene Symbol dhs-16
Ensembl C10F3.2
Entrez Gene 178983 Entrez gene
SwissProt O16881 EMBL-EBI
WormBase CE08067 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.1196.1.S1_AT similar to orphan short-chain dehydrogenase / reductase cfa
U133_X3P:HS2.380178.1.S1_3P_AT orphan short-chain dehydrogenase / reductase hs
HG-U133_PLUS_2:1553077_AT orphan short-chain dehydrogenase / reductase hs
MOE430B:1456074_AT orphan short chain dehydrogenase/reductase mm
MOUSE430_2:1456074_AT orphan short chain dehydrogenase/reductase mm
MG-U74CV2:166225_F_AT orphan short chain dehydrogenase/reductase mm
MOE430B:1430785_AT orphan short chain dehydrogenase/reductase mm
MOUSE430_2:1430785_AT orphan short chain dehydrogenase/reductase mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB69884 Dehydrogenases, short chain protein 16 [Caenorhabditis elegans] ref|NP_504554.1| DeHydrogenases, Short chain family member (dhs-16) [Caenorhabditis elegans] 0.0
blast CAE64533 Hypothetical protein CBG09275 [Caenorhabditis briggsae] 0.0
blast CAA98465 Hypothetical protein F35B12.2 [Caenorhabditis elegans] ref|NP_505941.2| DeHydrogenases, Short chain family member (dhs-20) [Caenorhabditis elegans] 2.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 7.9E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504554.1 3 4-23,301-323,345-367
C10F3.2 3 4-23,301-323,345-367
SNAP00000029257 3 4-23,301-323,345-367
GENEFINDER00000029263 3 4-23,301-323,345-367
Sequence
Target Sequence 
>C. ELEGANS:191950_AT
gagaccgtttggagtttcagttcatattttggaaccaggatgtttcaaaacagaactact
gaacaatgatgctcagagaatgagaattcagaagatttggaatagtttgtcagtggagac
caaagaagaatatggagaagactatagaaacgatttcgagcgtgcttgggaagccggtgt
gaacgttgtagcaaacccgaatattggatgggttgttgattgttactctcatgctctttt
ctcctggtggccacgacttcgctactgtcctggatgggatgccattttcatgttcatccc
actcagtatcttcccaactgctcttcaagattggattttggctggactctacaaactgaa
cccagggccatctttgacacctgctgtgttggttaaaaataagaagcgtcgttctgcgat
tcaatggattcagtttttgtctcaaattgctattattcccctgttatacacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACCGTTTGGAGTTTCAGTTCAT 147 345 630 Antisense
GATTTCGAGCGTGCTTGGGAAGCCG 186 427 781 Antisense
GAAGCCGGTGTGAACGTTGTAGCAA 582 343 799 Antisense
TGATTGTTACTCTCATGCTCTTTTC 301 563 846 Antisense
ACTTCGCTACTGTCCTGGATGGGAT 509 103 885 Antisense
GATGGGATGCCATTTTCATGTTCAT 262 409 902 Antisense
GATTGGATTTTGGCTGGACTCTACA 579 435 958 Antisense
CAAACTGAACCCAGGGCCATCTTTG 232 189 981 Antisense
CCATCTTTGACACCTGCTGTGTTGG 534 271 997 Antisense
GAAGCGTCGTTCTGCGATTCAATGG 675 343 1032 Antisense
GCTATTATTCCCCTGTTATACACTA 367 303 1078 Antisense
Sequence Source Affymetrix Proprietary Database