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[191949_at] protein-tyrosine phosphatase

Description C40A11.5 /REP_DB=WormBase Gene ID /WP=CE19368 /TR=Q9TZB1 /GB=AAC68761.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 09      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 17.8
(-2.7)
A 		47.8
(1.5)
A 		15.4
(-3)
A 		58.3
(3)
P 		43
B 44.7
(1.6)
A 		55.3
(3)
A 		8.2
(-3)
A 		28.7
(-0.4)
A 		47
C 17.6
(-0.3)
A 		23.9
(3)
A 		19.3
(0.6)
A 		12.5
(-3)
A 		11
avr 26.7
(-0.3) 		42.3
(3) 		14.3
(-3) 		33.2
(1.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 52.7
(3)
A 		4.2
(-3)
A 		26.4
(-0.3)
A 		6.1
(-2.8)
A 		44.4
(2)
A 		25.7
(-0.3)
A 		49
B 14.1
(-2.6)
A 		13.6
(-2.8)
A 		26.6
(3)
A 		15.1
(-2.1)
A 		13.1
(-3)
A 		14.4
(-2.4)
A 		14
C 24.7
(-0.9)
A 		34.9
(0.1)
A 		15.2
(-1.8)
A 		63.8
(3)
A 		3.4
(-3)
A 		6.5
(-2.7)
A 		60
avr 30.5
(3) 		17.6
(-2.2) 		22.7
(-0.1) 		28.3
(2.1) 		20.3
(-1.1) 		15.5
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.5
(-0.7)
A 		10.4
(3)
A 		4
(-3)
A 		8.5
(1.2)
P 		6
B 14.3
(3)
A 		13.7
(2.7)
A 		1.9
(-3)
A 		6.1
(-1)
A 		12
C 5.8
(1.6)
A 		6.9
(3)
A 		6.7
(2.8)
A 		2.1
(-3)
A 		5
avr 8.9
(1.6) 		10.3
(3) 		4.2
(-3) 		5.6
(-1.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.7
(1.1)
A 		1.5
(-3)
A 		5.7
(-0.9)
A 		1.6
(-2.9)
A 		13.4
(3)
A 		6.3
(-0.6)
A 		12
B 4.9
(-0.8)
A 		4.5
(-1.8)
A 		6.5
(3)
A 		4
(-3)
A 		5.3
(0.1)
A 		5.4
(0.4)
A 		3
C 9.1
(1.1)
A 		10.6
(1.9)
A 		3.9
(-1.6)
A 		12.8
(3)
A 		1.1
(-3)
A 		2.2
(-2.4)
A 		12
avr 7.9
(3) 		5.5
(-1.4) 		5.4
(-1.5) 		6.1
(-0.3) 		6.6
(0.6) 		4.6
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191949_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4801
Sequence Type Exemplar sequence
Representative Public ID C40A11.5 NCBI
Target Description C40A11.5 /REP_DB=WormBase Gene ID /WP=CE19368 /TR=Q9TZB1 /GB=AAC68761.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061792(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061792 NCBI Caenorhabditis elegans C40A11.5 (C40A11.5) mRNA, complete cds. 11/11 None
SNAP00000005074 ENSEMBL cdna:SNAP chromosome:CEL140:II:2133667:2135705:-1 11/11 None
C40A11.5 ENSEMBL cdna:known chromosome:CEL140:II:2133667:2135705:-1 gene:C40A11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005089 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2133665-2135704(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl C40A11.5
Entrez Gene 183354 Entrez gene
SwissProt Q9TZB1 EMBL-EBI
WormBase CE19368 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68761 Hypothetical protein C40A11.5 [Caenorhabditis elegans] ref|NP_494193.1| C40A11.5 [Caenorhabditis elegans] 1.0E-152
blast AAC68761 Hypothetical protein C40A11.5 [Caenorhabditis elegans] ref|NP_494193.1| C40A11.5 [Caenorhabditis elegans] 1.0E-142
blast AAB66199 Hypothetical protein K09F6.3 [Caenorhabditis elegans] ref|NP_494221.2| K09F6.3 [Caenorhabditis elegans] 1.0E-45
blast AAB66199 Hypothetical protein K09F6.3 [Caenorhabditis elegans] ref|NP_494221.2| K09F6.3 [Caenorhabditis elegans] 8.0E-42
blast CAE57897 Hypothetical protein CBG00946 [Caenorhabditis briggsae] 1.0E-15
blast CAE57897 Hypothetical protein CBG00946 [Caenorhabditis briggsae] 1.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.1E-25
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.0E-27
Sequence
Target Sequence 
>C. ELEGANS:191949_AT
gaaactcacacaatcagacactacttttacaaaggatggattgcacaaaatggcccagaa
ttgtccagagaaattttgaacgttttcaaagcggtcagaaaatcgaaatcggttgttgtt
cattgctcgactggaattggacgtgctgcggcgtttgctttcaccgagctcgcctaccaa
acgatgatgcttaacatgagacaaactccgacggttggtttggactatgtgaagttgatt
caagatctgagaagtatgcgagccggagccatctacacaccgatgcagctggcattttct
atcattatgttgttggatttcgtattggagaatgaactcagcaaggagacgaacatcaag
tatcaacagatcagaaattcttatttggacttgcgtaaaagaaagtacagaacatcggaa
gagtatatgcctgacggcggaaaaactgtggatatcgatcttaatgaggagggtaacaaa
agaaagccaaagccgaagcaaccgaaggagaaaatcacgcaccaatcactaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTCACACAATCAGACACTACT 529 357 250 Antisense
ATCGGTTGTTGTTCATTGCTCGACT 8 35 357 Antisense
GCTCGACTGGAATTGGACGTGCTGC 320 297 374 Antisense
GAGCTCGCCTACCAAACGATGATGC 432 387 415 Antisense
CCGACGGTTGGTTTGGACTATGTGA 515 261 457 Antisense
TGAGAAGTATGCGAGCCGGAGCCAT 281 569 497 Antisense
CCATCTACACACCGATGCAGCTGGC 31 271 518 Antisense
TGCAGCTGGCATTTTCTATCATTAT 80 579 533 Antisense
CGGAAGAGTATATGCCTGACGGCGG 86 241 665 Antisense
AAGCCAAAGCCGAAGCAACCGAAGG 9 127 733 Antisense
AGAAAATCACGCACCAATCACTAAT 5 73 758 Antisense
Sequence Source Affymetrix Proprietary Database