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[191944_at] Mitochondrial carrier proteins

Description K01C8.7 /REP_DB=WormBase Gene ID /WP=CE02268 /TR=Q21084 /GB=CAA88858.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Mitochondrial carrier proteins
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 03      4grp_high_8_8 > 37      6grp_highest_nonorm > 73      6grp_total > 64      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 409.9
(-3)
P 		533
(3)
P 		498.2
(1.3)
P 		494
(1.1)
P 		123
B 483.3
(-1)
P 		547.9
(3)
P 		477
(-1.4)
P 		451.1
(-3)
P 		97
C 475.8
(-3)
P 		522.5
(1.1)
P 		543.8
(3)
P 		506.2
(-0.3)
P 		68
avr 456.3
(-3) 		534.5
(3) 		506.3
(0.8) 		483.8
(-0.9) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 369.3
(-3)
P 		491.2
(-0.7)
P 		688
(3)
P 		614.8
(1.6)
P 		456
(-1.4)
P 		585.6
(1.1)
P 		319
B 423.5
(-3)
P 		507.5
(-0.5)
P 		624.7
(3)
P 		547.5
(0.7)
P 		457.9
(-2)
P 		611.9
(2.6)
P 		201
C 293.4
(-3)
P 		511.7
(0.4)
P 		516.2
(0.4)
P 		652.9
(2.6)
P 		409.7
(-1.2)
P 		682
(3)
P 		389
avr 362.1
(-3) 		503.5
(0.2) 		609.6
(2.6) 		605.1
(2.5) 		441.2
(-1.2) 		626.5
(3) 		264
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 149.3
(3)
P 		115.7
(0.4)
P 		130.2
(1.5)
P 		72.3
(-3)
P 		77
B 154.1
(3)
P 		135.3
(1.1)
P 		110.5
(-1.5)
P 		96.1
(-3)
P 		58
C 157.5
(1.2)
P 		150.2
(0.7)
P 		189.5
(3)
P 		85.4
(-3)
P 		104
avr 153.6
(3) 		133.7
(1.3) 		143.4
(2.1) 		84.6
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 68.1
(-3)
P 		174.7
(3)
P 		149.8
(1.6)
P 		155.9
(1.9)
P 		137.6
(0.9)
P 		142.6
(1.2)
P 		107
B 147.4
(-2.8)
P 		168.9
(-1.3)
P 		151.7
(-2.5)
P 		145
(-3)
P 		186
(-0)
P 		228.2
(3)
P 		83
C 108.8
(-3)
P 		156.1
(-0.6)
P 		131.4
(-1.9)
P 		131.3
(-1.9)
P 		132.6
(-1.8)
P 		228.3
(3)
P 		120
avr 108.1
(-3) 		166.6
(0.8) 		144.3
(-0.6) 		144.1
(-0.6) 		152.1
(-0.1) 		199.7
(3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3238
Sequence Type Exemplar sequence
Representative Public ID K01C8.7 NCBI
Target Description K01C8.7 /REP_DB=WormBase Gene ID /WP=CE02268 /TR=Q21084 /GB=CAA88858.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Mitochondrial carrier proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063345 NCBI Caenorhabditis elegans K01C8.7 (K01C8.7) mRNA, complete cds. 11/11 None
GENEFINDER00000019067 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8276312:8277347:1 11/11 None
K01C8.7 ENSEMBL cdna:known chromosome:CEL140:II:8276312:8277347:1 gene:K01C8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019059 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8276308-8277344(+) 100.0 100.0
Public Domain and Genome References
Gene Title Mitochondrial carrier proteins
Ensembl K01C8.7
Entrez Gene 186841 Entrez gene
SwissProt Q21084 EMBL-EBI
WormBase CE02268 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591955_AT similar to mitochondrial folate transporter/carrier cfa
CANINE_2:CFAAFFX.1910.1.S1_S_AT similar to mitochondrial folate transporter/carrier cfa
CANINE_2:CFAAFFX.1912.1.S1_AT similar to mitochondrial folate transporter/carrier cfa
CANINE_2:CFAAFFX.1913.1.S1_S_AT similar to mitochondrial folate transporter/carrier cfa
DROSOPHILA_2:1633840_A_AT dm
DROSOPHILA_2:1632304_AT dm
DROSGENOME1:152861_AT dm
CHICKEN:GGA.17073.1.S1_AT solute carrier family 25, member 32 gga
CHICKEN:GGAAFFX.11224.2.S1_S_AT solute carrier family 25, member 32 gga
CHICKEN:GGAAFFX.11224.3.S1_AT solute carrier family 25, member 32 gga
CHICKEN:GGAAFFX.11224.4.S1_AT solute carrier family 25, member 32 gga
CHICKEN:GGAAFFX.11224.4.S1_S_AT solute carrier family 25, member 32 gga
CHICKEN:GGAAFFX.12502.1.S1_S_AT solute carrier family 25, member 32 gga
HG-U133_PLUS_2:221020_S_AT solute carrier family 25, member 32 hs
HG-U133A:221020_S_AT solute carrier family 25, member 32 hs
HG-FOCUS:221020_S_AT solute carrier family 25, member 32 hs
HG-U133A_2:221020_S_AT solute carrier family 25, member 32 hs
HU35KSUBA:RC_AA029356_AT solute carrier family 25, member 32 hs
U133_X3P:G13540550_3P_S_AT solute carrier family 25, member 32 hs
HG-U95C:60525_AT solute carrier family 25, member 32 hs
HG-U95C:63705_F_AT solute carrier family 25, member 32 hs
HG-U95C:63906_F_AT solute carrier family 25, member 32 hs
HG-U95E:75422_AT solute carrier family 25, member 32 hs
MOUSE430_2:1429462_AT solute carrier family 25, member 32 mm
MOE430B:1429462_AT solute carrier family 25, member 32 mm
MG-U74BV2:115365_AT solute carrier family 25, member 32 mm
MOE430B:1453149_AT solute carrier family 25, member 32 mm
MOUSE430_2:1453149_AT solute carrier family 25, member 32 mm
MOE430B:1435483_X_AT solute carrier family 25, member 32 mm
MOUSE430_2:1435483_X_AT solute carrier family 25, member 32 mm
RAE230B:1381472_AT Similar to Mitochondrial folate transporter/carrier rn
RAT230_2:1381472_AT Similar to Mitochondrial folate transporter/carrier rn
RAE230B:1382760_AT Similar to Mitochondrial folate transporter/carrier rn
RAT230_2:1382760_AT Similar to Mitochondrial folate transporter/carrier rn
RG-U34B:RC_AA899481_AT Similar to Mitochondrial folate transporter/carrier rn
YEAST_2:1770979_AT Protein required for transport of flavin adenine dinucleotide (FAD) from mitochondria, where it is synthesized from riboflavin, to the cytosol Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88858 Hypothetical protein K01C8.7 [Caenorhabditis elegans] ref|NP_495746.1| K01C8.7 [Caenorhabditis elegans] 1.0E-172
blast CAE57676 Hypothetical protein CBG00670 [Caenorhabditis briggsae] 1.0E-146
blast AAH48057 Mitochondrial folate transporter/carrier [Danio rerio] ref|NP_956550.1| mitochondrial folate transporter/carrier [Danio rerio] 1.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.7E-29
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.7E-23
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.5E-24
Sequence
Target Sequence 
>C. ELEGANS:191944_AT
agtggatgcatatctggctcagctatcatgtgcattactaatccaatttggctcacaaaa
actcgactatgccttcagtatgaaaatcaacagtctaaaaagtatgcaggaatgatggat
tgcttgaagaaaaccgttaaacaggagggattttttggattgtatcgaggtttcgtcacg
ggtgtcataggaacaacacacggagcagttcaaatcgcagcatatagctggataattgat
aaaagatgtcaatcacaagggttacctaaagattcatttttgagtcagacggattatgtt
atcgcttcttcaacttccaaggttcttgccacaacaatcacattcccgtatcaagttctt
cgtactagaatgcaggatcataatacagattctcgtggagtttggaaaacaacactaaaa
acaatacataacgagggaatcggtggactttggaaaggatgtcttattgcaaatgttcgg
caacttccagctgctgtggtcacattcctcacgtatgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGGATGCATATCTGGCTCAGCTA 286 59 346 Antisense
GGCTCAGCTATCATGTGCATTACTA 470 539 361 Antisense
AAAACTCGACTATGCCTTCAGTATG 289 131 403 Antisense
GTATCGAGGTTTCGTCACGGGTGTC 469 453 507 Antisense
CACACGGAGCAGTTCAAATCGCAGC 338 195 542 Antisense
GACGGATTATGTTATCGCTTCTTCA 340 377 633 Antisense
GCTTCTTCAACTTCCAAGGTTCTTG 352 305 649 Antisense
GGTTCTTGCCACAACAATCACATTC 554 505 666 Antisense
CACATTCCCGTATCAAGTTCTTCGT 302 197 684 Antisense
GCAACTTCCAGCTGCTGTGGTCACA 260 319 825 Antisense
TGGTCACATTCCTCACGTATGAAAA 9 553 842 Antisense
Sequence Source Affymetrix Proprietary Database