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[191943_at] mitochondrial carrier protein

Description C14C10.1 /REP_DB=WormBase Gene ID /WP=CE05280 /TR=Q17970 /GB=CAA98424.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=mitochondrial carrier protein
Cluster 6grp_total > 88      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 75.7
(-2.3)
A 		91
(0.3)
A 		71.9
(-3)
A 		106.3
(3)
P 		34
B 100.5
(3)
A 		98.3
(2.7)
A 		61.5
(-1.7)
A 		51.2
(-3)
A 		49
C 94.7
(-1.2)
A 		132.4
(3)
A 		78.9
(-3)
A 		131.2
(2.9)
A 		54
avr 90.3
(0.2) 		107.2
(3) 		70.8
(-3) 		96.2
(1.2) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 756
1 2 3 4 5 6 range
A 60.1
(-3)
A 		97
(-2.7)
A 		102
(-2.6)
A 		109
(-2.6)
M 		354.9
(-0.3)
P 		722.7
(3)
P 		663
B 92.9
(-2.4)
A 		87.8
(-2.5)
A 		29.1
(-3)
A 		90.5
(-2.5)
A 		447.4
(0.7)
P 		702.8
(3)
P 		674
C 88.7
(-2.8)
A 		79.9
(-2.9)
A 		68
(-3)
A 		84.6
(-2.9)
A 		351.6
(-0.6)
P 		785.1
(3)
P 		717
avr 80.6
(-2.9) 		88.2
(-2.8) 		66.4
(-3) 		94.7
(-2.7) 		384.6
(-0.2) 		736.9
(3) 		671
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 27.6
(3)
A 		19.7
(-1)
A 		18.8
(-1.4)
A 		15.6
(-3)
P 		12
B 32
(3)
A 		24.3
(0.8)
A 		14.3
(-2)
A 		10.9
(-3)
A 		21
C 31.3
(0.5)
A 		38.1
(3)
A 		27.5
(-1)
A 		22.1
(-3)
A 		16
avr 30.3
(3) 		27.4
(1.8) 		20.2
(-1.3) 		16.2
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 11.1
(-3)
A 		34.5
(-2.1)
A 		22.2
(-2.6)
A 		27.6
(-2.4)
M 		107.1
(0.5)
P 		175.9
(3)
P 		165
B 32.3
(-2.4)
A 		29.2
(-2.5)
A 		7.1
(-3)
A 		24
(-2.6)
A 		181.8
(1.1)
P 		262.1
(3)
P 		255
C 32.9
(-2.6)
A 		24.4
(-2.8)
A 		17.3
(-3)
A 		17
(-3)
A 		113.8
(-0.6)
P 		262.8
(3)
P 		246
avr 25.4
(-2.7) 		29.4
(-2.6) 		15.5
(-3) 		22.9
(-2.8) 		134.2
(0.3) 		233.6
(3) 		218
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14571
Sequence Type Exemplar sequence
Representative Public ID C14C10.1 NCBI
Target Description C14C10.1 /REP_DB=WormBase Gene ID /WP=CE05280 /TR=Q17970 /GB=CAA98424.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=mitochondrial carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073747(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073747 NCBI Caenorhabditis elegans C14C10.1 (C14C10.1) mRNA, complete cds. 11/11 None
SNAP00000017649 ENSEMBL cdna:SNAP chromosome:CEL140:V:12591016:12592209:1 11/11 None
GENEFINDER00000017657 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12591016:12592260:1 11/11 None
C14C10.1 ENSEMBL cdna:known chromosome:CEL140:V:12591016:12592209:1 gene:C14C10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12591015-12592209(+) 99.3 100.0
Public Domain and Genome References
Gene Title mitochondrial carrier protein
Ensembl C14C10.1
Entrez Gene 182608 Entrez gene
SwissProt Q17970 EMBL-EBI
WormBase CE05280 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98424 Hypothetical protein C14C10.1 [Caenorhabditis elegans] ref|NP_506148.1| C14C10.1 [Caenorhabditis elegans] 0.0
blast CAE75517 Hypothetical protein CBG23535 [Caenorhabditis briggsae] 1.0E-163
blast CAB04697 Hypothetical protein T05F1.8 [Caenorhabditis elegans] ref|NP_492561.2| T05F1.8 [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.8E-24
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.0E-27
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.8E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506148.1 3 34-56,233-252,281-303
C14C10.1 3 34-56,233-252,281-303
SNAP00000017649 3 34-56,233-252,281-303
GENEFINDER00000017657 3 34-56,233-252,281-303
Sequence
Target Sequence 
>C. ELEGANS:191943_AT
tgcgtacacctatcgttcttgggtgtatctagccgctgcttcatcagctgaattctttgc
tgacttctttttggctccatttgaagctgtgaaagtgagaatgcaaacttcatcaactgc
tccaaaaacaatgagagagtgtatgccaatgatttacaaaaaagaaggaatgtacgggtt
tttcaagggactaccaccactttggactcgtcaaattccatatacaacagtgaagtttgt
atgtttcgagcggataatggagttgatgtatactcacgttgttcctaagccaagagctga
gtgtactaaaatggaacagcttttggtcacattttcagctggatatttggcaggtattct
gtgtgctgttgcctcgcatcctccagatgtcattgtctcccaactcaatcaagatccgaa
tgccacgttgacgagtactgcgaagaaattgggattaaaaggaatgtgggcgggtcttgg
agccagaattatcatgattggtacaattactgctatgcaatggttcatttatgatggttg
gaaagttgttatgggaattccaagaccgcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGTACACCTATCGTTCTTGGGTG 667 577 390 Antisense
TGTATCTAGCCGCTGCTTCATCAGC 43 561 413 Antisense
TCTTTGCTGACTTCTTTTTGGCTCC 286 615 443 Antisense
TCAAGGGACTACCACCACTTTGGAC 216 627 572 Antisense
TGTATACTCACGTTGTTCCTAAGCC 12 561 656 Antisense
GGAACAGCTTTTGGTCACATTTTCA 398 529 702 Antisense
CAGGTATTCTGTGTGCTGTTGCCTC 385 207 740 Antisense
GCATCCTCCAGATGTCATTGTCTCC 592 309 765 Antisense
AATGCCACGTTGACGAGTACTGCGA 467 167 808 Antisense
GAATGTGGGCGGGTCTTGGAGCCAG 624 329 851 Antisense
TTATGGGAATTCCAAGACCGCCTCC 299 671 938 Antisense
Sequence Source Affymetrix Proprietary Database