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[191942_s_at]

Description ZK1151.2A /REP_DB=WormBase Gene ID /WP=CE28424 /TR=O18291 /GB=CAB07725.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Spectrin repeat (16 domains)
Cluster 6grp_high1_10_10 > 25      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_total > 26      4grp_total > 47      6grp_cgc > 04      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 420.8
(3)
P 		264.2
(-2.3)
P 		243.7
(-3)
P 		290.7
(-1.4)
P 		177
B 415.3
(3)
P 		232.5
(-3)
P 		271.6
(-1.7)
P 		253.5
(-2.3)
P 		183
C 397.9
(3)
P 		380.2
(2)
P 		313
(-1.6)
P 		288.2
(-3)
P 		110
avr 411.3
(3) 		292.3
(-2.3) 		276.1
(-3) 		277.5
(-2.9) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 403.7
(2.1)
P 		440.2
(3)
P 		187.8
(-3)
P 		233.2
(-1.9)
P 		307
(-0.2)
P 		327.1
(0.3)
P 		252
B 438.3
(3)
P 		431.8
(2.8)
P 		284.5
(-1.1)
P 		285
(-1.1)
P 		214
(-3)
P 		284.1
(-1.1)
P 		224
C 400
(3)
P 		384.9
(2.6)
P 		249
(-1.4)
P 		217.9
(-2.3)
M 		349.8
(1.6)
P 		192.1
(-3)
P 		208
avr 414
(2.8) 		419
(3) 		240.4
(-3) 		245.4
(-2.8) 		290.3
(-1.3) 		267.8
(-2.1) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 153.2
(3)
P 		57.4
(-2.2)
P 		63.7
(-1.9)
P 		42.5
(-3)
P 		111
B 132.4
(3)
P 		57.4
(-2.7)
P 		62.9
(-2.3)
P 		54
(-3)
P 		78
C 131.7
(3)
P 		109.3
(1.4)
P 		109.1
(1.4)
P 		48.6
(-3)
P 		83
avr 139.1
(3) 		74.7
(-1.3) 		78.6
(-1) 		48.4
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 74.4
(-1.3)
P 		156.6
(3)
P 		40.9
(-3)
P 		59.1
(-2.1)
P 		92.6
(-0.3)
P 		79.6
(-1)
P 		116
B 152.5
(3)
P 		143.7
(2.4)
P 		69.1
(-3)
P 		75.5
(-2.5)
P 		86.9
(-1.7)
P 		105.9
(-0.4)
P 		83
C 148.3
(3)
P 		117.4
(1.2)
P 		63.4
(-1.9)
P 		43.8
(-3)
M 		113.2
(1)
P 		64.3
(-1.8)
P 		105
avr 125.1
(2) 		139.2
(3) 		57.8
(-3) 		59.5
(-2.9) 		97.6
(-0.1) 		83.3
(-1.1) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191942_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1380
Sequence Type Exemplar sequence
Representative Public ID ZK1151.2A NCBI
Target Description ZK1151.2A /REP_DB=WormBase Gene ID /WP=CE28424 /TR=O18291 /GB=CAB07725.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Spectrin repeat (16 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026683(11), NM_001026684(11), NM_001026688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026683 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026684 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026688 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
ZK1151.1b ENSEMBL cdna:known chromosome:CEL140:I:11755550:11800240:-1 gene:ZK1151.1 11/11 A 
ZK1151.1c ENSEMBL cdna:known chromosome:CEL140:I:11755565:11800188:-1 gene:ZK1151.1 11/11 A 
ZK1151.1g ENSEMBL cdna:known chromosome:CEL140:I:11755884:11800188:-1 gene:ZK1151.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173058 7 3 NM_001026682 175291_at (11), 182228_s_at (11)
NM_001026683 191942_s_at (11), 194232_x_at (11)
NM_001026684 191942_s_at (11), 194232_x_at (11)
NM_001026685 182228_s_at (11)
NM_001026686 175291_at (11), 182228_s_at (11)
NM_001026687 182228_s_at (11)
NM_001026688 191942_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11755814-11768595(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1151.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD90183 Hypothetical protein ZK1151.1b [Caenorhabditis elegans] emb|CAD90187.2| Hypothetical protein ZK1151.1b [Caenorhabditis elegans] emb|CAD90176.2| Hypothetical protein ZK1151.1b [Caenorhabditis elegans] emb|CAD44324.1| VAB-10B protein [Caenorhabditis elegans] ref|NP_001021854.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
blast CAD90184 Hypothetical protein ZK1151.1c [Caenorhabditis elegans] emb|CAD90188.2| Hypothetical protein ZK1151.1c [Caenorhabditis elegans] emb|CAD90177.2| Hypothetical protein ZK1151.1c [Caenorhabditis elegans] ref|NP_001021855.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
blast CAD44516 VAB-10B protein [Caenorhabditis elegans] 0.0
blast CAH04759 Hypothetical protein ZK1151.1g [Caenorhabditis elegans] emb|CAH04743.1| Hypothetical protein ZK1151.1g [Caenorhabditis elegans] emb|CAH04711.1| Hypothetical protein ZK1151.1g [Caenorhabditis elegans] ref|NP_001021859.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
blast T26964 hypothetical protein ZK1151.2b - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 4.69999980926514
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 1.60000002384186
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 4.59999990463257
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 1.5
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 3.40000009536743
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.970000028610229
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 5.8E-34
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.6E-34
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.45
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.067
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0011
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.1E-6
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.0E-7
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.12
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.2E-5
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.027
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0014
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.5E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.1E-6
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.2E-18
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.4E-7
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.16
Pfam IPR002017 EMBL-EBI Spectrin repeat 5.4E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.0E-7
Pfam IPR003108 EMBL-EBI Growth-arrest-specific protein 2 5.0E-37
Pfam IPR003108 EMBL-EBI Growth-arrest-specific protein 2 5.0E-37
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.0E-7
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.12
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.2E-5
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.027
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0014
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.5E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.1E-6
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.2E-18
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.4E-7
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.16
Pfam IPR002017 EMBL-EBI Spectrin repeat 5.4E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.0E-7
Pfam IPR003108 EMBL-EBI Growth-arrest-specific protein 2 5.0E-37
Sequence
Target Sequence 
>C. ELEGANS:191942_S_AT
tcaagagaatggtccgcatcctccgatcgactgtgatggttcgagtcggaggtggatggg
agtcgctggacgagttcctccacaaacatgatccatgtcgtgccaagggacgtcttaaca
tcaacatgttcccagaagctcgtccgattcatgcgcttgactcgatgcgatctttcacca
agaatcgacacggcaagcagcttccgaccaccggaacgcctggtccgattatgaagattc
gcgagaagaccgacagaagtgtgccgatgagcggagggctcggcggtacagctggctata
cggttaccactgattcgcatagacacactgacgctcgcccatccagaattccacgtgctc
catcggacatgagcgctgggcgcctgagccgtgtcggaagtgtctccaactcgaaaaact
cgatcgtcgactcgtcgacaccttcccgaccagaatcccgagcctcttcggatgctggag
accgacaaacgaggattccctcgttgagagcacgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGAGAATGGTCCGCATCCTCCG 133 633 9800 Antisense
ATCCTCCGATCGACTGTGATGGTTC 531 39 9817 Antisense
GACGAGTTCCTCCACAAACATGATC 202 379 9868 Antisense
GATCCATGTCGTGCCAAGGGACGTC 374 383 9889 Antisense
GCTTGACTCGATGCGATCTTTCACC 468 307 9954 Antisense
TCGGCGGTACAGCTGGCTATACGGT 508 605 10079 Antisense
TATACGGTTACCACTGATTCGCATA 145 655 10096 Antisense
GATTCGCATAGACACACTGACGCTC 393 433 10111 Antisense
CTCCATCGGACATGAGCGCTGGGCG 82 235 10157 Antisense
GTGTCGGAAGTGTCTCCAACTCGAA 351 487 10190 Antisense
GGATTCCCTCGTTGAGAGCACGTAA 471 507 10292 Antisense
Sequence Source Affymetrix Proprietary Database