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[191941_at] 7TM chemoreceptor, srx family

Description K07C6.11 /REP_DB=WormBase Gene ID /WP=CE17182 /TR=O44639 /GB=AAB94253.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster 6grp_total > 69      4grp_total > 22      6grp_cgc > 18      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 177.2
(1.7)
P 		91
(-1)
A 		28.9
(-3)
A 		219.9
(3)
P 		191
B 201.4
(3)
P 		97.6
(-0.4)
A 		15.9
(-3)
A 		176.2
(2.2)
P 		186
C 215.9
(3)
P 		80.6
(-2.2)
A 		60.3
(-3)
A 		173.8
(1.4)
P 		156
avr 198.2
(3) 		89.7
(-1) 		35
(-3) 		190
(2.7) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 128.1
(3)
P 		84
(-0.6)
P 		55.3
(-3)
P 		56.4
(-2.9)
A 		104.2
(1)
A 		93.1
(0.1)
P 		73
B 74.8
(0.2)
P 		86.7
(0.9)
P 		90
(1.1)
M 		16.1
(-3)
A 		80
(0.5)
P 		124.5
(3)
P 		108
C 56.3
(-1.7)
A 		65.2
(-1)
A 		39.9
(-3)
A 		68
(-0.8)
A 		53
(-2)
P 		115.5
(3)
P 		76
avr 86.4
(0.7) 		78.6
(-0) 		61.7
(-1.6) 		46.8
(-3) 		79.1
(0) 		111
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 64.5
(3)
P 		19.8
(-1.7)
A 		7.6
(-3)
A 		32.2
(-0.4)
P 		57
B 64.2
(3)
P 		24.1
(-1)
A 		3.7
(-3)
A 		37.6
(0.4)
P 		61
C 71.5
(3)
P 		23.2
(-2.7)
A 		21
(-3)
A 		29.3
(-2)
P 		51
avr 66.7
(3) 		22.4
(-1.8) 		10.8
(-3) 		33
(-0.6) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 23.6
(0.6)
P 		29.9
(2.5)
P 		12
(-3)
P 		14.3
(-2.3)
A 		31.4
(3)
A 		22.7
(0.3)
P 		19
B 26
(0.1)
P 		28.9
(0.5)
P 		21.9
(-0.5)
M 		4.3
(-3)
A 		32.5
(1)
P 		46.4
(3)
P 		42
C 20.9
(-0.7)
A 		19.9
(-0.9)
A 		10.1
(-3)
A 		13.7
(-2.2)
A 		17.1
(-1.5)
P 		38.7
(3)
P 		29
avr 23.5
(0) 		26.2
(0.7) 		14.7
(-2.1) 		10.8
(-3) 		27
(0.9) 		35.9
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191941_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15917
Sequence Type Exemplar sequence
Representative Public ID K07C6.11 NCBI
Target Description K07C6.11 /REP_DB=WormBase Gene ID /WP=CE17182 /TR=O44639 /GB=AAB94253.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071681(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071681 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-68) (srx-68) mRNA, complete cds. 11/11 None
SNAP00000025758 ENSEMBL cdna:SNAP chromosome:CEL140:V:3912622:3914304:1 11/11 None
GENEFINDER00000025779 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3912622:3914304:1 11/11 None
K07C6.11 ENSEMBL cdna:known chromosome:CEL140:V:3912622:3914304:1 gene:K07C6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3912621-3914304(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-68
Ensembl K07C6.11
Entrez Gene 187099 Entrez gene
SwissProt O44639 EMBL-EBI
WormBase CE17182 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94253 Serpentine receptor, class x protein 68 [Caenorhabditis elegans] ref|NP_504082.1| Serpentine Receptor, class X family member (srx-68) [Caenorhabditis elegans] 1.0E-174
blast AAB94253 Serpentine receptor, class x protein 68 [Caenorhabditis elegans] ref|NP_504082.1| Serpentine Receptor, class X family member (srx-68) [Caenorhabditis elegans] 1.0E-168
blast AAB52302 Serpentine receptor, class x protein 56 [Caenorhabditis elegans] ref|NP_504885.2| Serpentine Receptor, class X family member (srx-56) [Caenorhabditis elegans] 1.0E-111
blast CAE57775 Hypothetical protein CBG00797 [Caenorhabditis briggsae] 1.0E-108
blast AAB52302 Serpentine receptor, class x protein 56 [Caenorhabditis elegans] ref|NP_504885.2| Serpentine Receptor, class X family member (srx-56) [Caenorhabditis elegans] 1.0E-108
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504082.1 7 4-26,38-60,80-102,123-145,174-193,221-243,247-269
K07C6.11 7 4-26,38-60,80-102,123-145,174-193,221-243,247-269
SNAP00000025758 7 4-26,38-60,80-102,123-145,174-193,214-236,240-262
GENEFINDER00000025779 7 4-26,38-60,80-102,123-145,174-193,221-243,247-269
Sequence
Target Sequence 
>C. ELEGANS:191941_AT
cccatttcgccatttcaatcaatcgattttttgccgtttggatgcctctcaaatacgagt
ccatgttcaacatcaaacgtaccagatggatgatagttttcatgtggatttttattggat
ccattgcagttctcttctaccaaaagttctgctatctctactacgacgaggcaactcatt
tcttcacgtttaccaatacagagttttgcggaatgattgggtggtatggggattttttga
agaatgctgtaattgttgcggtggtagtttccttggacattcttactgttataaaagtgc
gattttcccgaaaaaagatccaagctagagtaaaccaggaaaaccaaaacaagctttctc
aaagggacattcgttttctcaaacaggcagtcttccaagcatccgtattcatgttggagc
ttttgacatacttcttctttcctctctacttccaaaaccgctgggtcgttttcttcggaa
cttcattcgcctgggtcgctgtccacgcggctgatggaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCATTTCGCCATTTCAATCAATCG 517 259 287 Antisense
GATTTTTTGCCGTTTGGATGCCTCT 224 429 311 Antisense
GGATGCCTCTCAAATACGAGTCCAT 278 513 326 Antisense
TATTGGATCCATTGCAGTTCTCTTC 680 665 399 Antisense
AAAGTTCTGCTATCTCTACTACGAC 117 123 429 Antisense
GACGAGGCAACTCATTTCTTCACGT 628 377 451 Antisense
GTTGCGGTGGTAGTTTCCTTGGACA 438 437 541 Antisense
CAAACAGGCAGTCTTCCAAGCATCC 659 191 666 Antisense
GGAGCTTTTGACATACTTCTTCTTT 541 519 702 Antisense
TCTACTTCCAAAACCGCTGGGTCGT 555 611 731 Antisense
GCTGTCCACGCGGCTGATGGAATGG 297 291 784 Antisense
Sequence Source Affymetrix Proprietary Database