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[191940_at] transcription factor AP-2 like

Description F28C6.2 /REP_DB=WormBase Gene ID /WP=CE03273 /TR=Q19862 /GB=CAA92668.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcription factor AP-2 like
Cluster 6grp_total > 97      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 81.3
(-2.1)
A 		95.4
(0.2)
A 		75.9
(-3)
P 		112.9
(3)
A 		37
B 60.2
(-1.7)
A 		46.3
(-3)
P 		95.4
(1.7)
P 		108.9
(3)
A 		63
C 40.6
(-3)
A 		147
(0.6)
A 		62.4
(-2.3)
P 		218.9
(3)
P 		178
avr 60.7
(-3) 		96.2
(-0.5) 		77.9
(-1.8) 		146.9
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 379
1 2 3 4 5 6 range
A 57.5
(-2.2)
A 		7.7
(-3)
A 		57.6
(-2.2)
A 		107.6
(-1.4)
A 		287
(1.4)
P 		386.8
(3)
P 		379
B 67.3
(-3)
A 		65.3
(-3)
A 		94.6
(-2.4)
M 		106.4
(-2.1)
P 		193.7
(-0.3)
P 		350.6
(3)
P 		285
C 60.7
(-3)
A 		134.9
(-1.6)
P 		74.9
(-2.7)
A 		168.7
(-1)
A 		204.8
(-0.3)
P 		378.9
(3)
P 		318
avr 61.8
(-3) 		69.3
(-2.9) 		75.7
(-2.7) 		127.6
(-1.7) 		228.5
(0.2) 		372.1
(3) 		310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 29.6
(3)
A 		20.7
(-1.1)
A 		19.8
(-1.5)
P 		16.5
(-3)
A 		13
B 19.2
(1)
A 		11.4
(-3)
P 		22.1
(2.4)
P 		23.2
(3)
A 		12
C 13.4
(-3)
A 		42.3
(3)
A 		21.8
(-1.3)
P 		36.9
(1.9)
P 		29
avr 20.7
(-3) 		24.8
(2.1) 		21.2
(-2.4) 		25.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 10.6
(-2.5)
A 		2.8
(-3)
A 		12.5
(-2.4)
A 		27.3
(-1.4)
A 		86.6
(2.5)
P 		94.2
(3)
P 		91
B 23.4
(-2.9)
A 		21.7
(-3)
A 		23
(-2.9)
M 		28.2
(-2.6)
P 		78.7
(0.1)
P 		130.7
(3)
P 		109
C 22.5
(-2.8)
A 		41.2
(-1.8)
P 		19.1
(-3)
A 		33.9
(-2.2)
A 		66.3
(-0.4)
P 		126.8
(3)
P 		108
avr 18.8
(-3) 		21.9
(-2.8) 		18.2
(-3) 		29.8
(-2.3) 		77.2
(0.6) 		117.2
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3555
Sequence Type Exemplar sequence
Representative Public ID F28C6.2 NCBI
Target Description F28C6.2 /REP_DB=WormBase Gene ID /WP=CE03273 /TR=Q19862 /GB=CAA92668.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcription factor AP-2 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063418 NCBI Caenorhabditis elegans F28C6.2 (F28C6.2) mRNA, complete cds. 11/11 None
SNAP00000038090 ENSEMBL cdna:SNAP chromosome:CEL140:II:8594271:8596028:1 11/11 None
GENEFINDER00000038103 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8594271:8596079:1 11/11 None
F28C6.2 ENSEMBL cdna:known chromosome:CEL140:II:8594271:8596028:1 gene:F28C6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8594267-8596025(+) 99.13 100.0
Public Domain and Genome References
Gene Title transcription factor AP-2 like
Ensembl F28C6.2
Entrez Gene 185047 Entrez gene
SwissProt Q19862 EMBL-EBI
WormBase CE03273 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92668 Hypothetical protein F28C6.2 [Caenorhabditis elegans] ref|NP_495819.1| F28C6.2 [Caenorhabditis elegans] 0.0
blast CAA92669 Hypothetical protein F28C6.1 [Caenorhabditis elegans] ref|NP_495818.1| F28C6.1 [Caenorhabditis elegans] 1.0E-177
blast CAA92669 Hypothetical protein F28C6.1 [Caenorhabditis elegans] ref|NP_495818.1| F28C6.1 [Caenorhabditis elegans] 1.0E-171
blast CAE57573 Hypothetical protein CBG00551 [Caenorhabditis briggsae] 4.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR004979 EMBL-EBI Transcription factor AP-2 5.9E-110
Pfam IPR004979 EMBL-EBI Transcription factor AP-2 4.7E-100
Sequence
Target Sequence 
>C. ELEGANS:191940_AT
tataatcgcccaggagatgcttgaaaaactaatgtcgagtggcaataatctggatgtttg
ccacagaatgttaaaaaatacaacggcaaccataactcgagttataaaaactcttgaagt
tcgtcaaccaaagataactggacaagaagaaaagctaaaaggaaataatctcgatctctc
ttatcacaatttctcattgataactcacggatttggtcatccaaattccttatcccacta
ccgaagttatctttcaatcgttgagcgagcagttcttttatgtgaaaaaatacaaaatgg
tcaatcgttgttgtcgaatgaagatgtgattcctggtcaaaaaccgttcgaaagaatgtc
aaatgaatactttgtcgaatggcaaatgaatttatataagaagaaattggccaaacaaat
ggaagaagtagaagaaaataagagccaacggggggagcatcaacagattcatcaacatca
gctatatcagcaacatcatacgaatacacatccgccaatgccattaatgcctccttccca
aatgaatttgtgtcctccaatcacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAATCGCCCAGGAGATGCTTGAA 185 659 1023 Antisense
ATACAACGGCAACCATAACTCGAGT 552 23 1100 Antisense
AATCTCGATCTCTCTTATCACAATT 61 171 1189 Antisense
TGGTCATCCAAATTCCTTATCCCAC 528 551 1236 Antisense
ATCCCACTACCGAAGTTATCTTTCA 528 37 1254 Antisense
GTTGAGCGAGCAGTTCTTTTATGTG 39 439 1282 Antisense
ATTCATCAACATCAGCTATATCAGC 408 11 1489 Antisense
ATCATACGAATACACATCCGCCAAT 628 29 1517 Antisense
ACATCCGCCAATGCCATTAATGCCT 48 107 1530 Antisense
TTAATGCCTCCTTCCCAAATGAATT 246 683 1546 Antisense
ATGAATTTGTGTCCTCCAATCACGC 617 43 1564 Antisense
Sequence Source Affymetrix Proprietary Database