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[191939_at]

Description F08G5.5 /REP_DB=WormBase Gene ID /WP=CE05575 /TR=Q19222 /GB=CAA94585.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronyltransferase like
Cluster 4grp_high_8_8 > 44      6grp_total > 34      4grp_total > 51      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 93.7
(-2.3)
P 		140.2
(3)
P 		106.1
(-0.9)
P 		87.1
(-3)
A 		53
B 144.9
(2.1)
P 		151.9
(3)
P 		139.5
(1.4)
P 		106.5
(-3)
A 		45
C 123.6
(0.5)
P 		156.9
(3)
P 		132.5
(1.2)
P 		76.3
(-3)
P 		81
avr 120.7
(0.1) 		149.7
(3) 		126
(0.6) 		90
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 39.9
(1.6)
A 		8.1
(-3)
A 		49.4
(3)
A 		27.7
(-0.2)
A 		20.3
(-1.2)
A 		29.8
(0.2)
A 		41
B 9.7
(-2.3)
A 		46.6
(3)
A 		22
(-0.5)
A 		4.9
(-3)
A 		28.8
(0.4)
A 		16
(-1.4)
A 		42
C 40
(3)
A 		33.2
(1.8)
A 		11.1
(-2)
A 		5.9
(-2.9)
A 		39.7
(2.9)
A 		5.4
(-3)
A 		35
avr 29.9
(3) 		29.3
(2.8) 		27.5
(2.2) 		12.8
(-3) 		29.6
(2.9) 		17.1
(-1.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 34.1
(3)
P 		30.4
(2)
P 		27.7
(1.2)
P 		12.7
(-3)
A 		21
B 46.2
(3)
P 		37.5
(0.8)
P 		32.3
(-0.5)
P 		22.7
(-3)
A 		24
C 40.9
(2)
P 		45.1
(2.8)
P 		46.2
(3)
P 		12.9
(-3)
P 		33
avr 40.4
(3) 		37.7
(2.3) 		35.4
(1.8) 		16.1
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.4
(0.4)
A 		2.9
(-3)
A 		10.8
(3)
A 		7
(0.1)
A 		6.1
(-0.6)
A 		7.3
(0.3)
A 		8
B 3.4
(-2.1)
A 		15.5
(3)
A 		5.3
(-1.3)
A 		1.3
(-3)
A 		11.7
(1.4)
A 		6
(-1)
A 		14
C 14.8
(3)
A 		10.1
(0.9)
A 		2.8
(-2.3)
A 		1.2
(-3)
A 		12.8
(2.1)
A 		1.8
(-2.7)
A 		14
avr 8.5
(1.5) 		9.5
(2.4) 		6.3
(-0.3) 		3.2
(-3) 		10.2
(3) 		5
(-1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191939_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8966
Sequence Type Exemplar sequence
Representative Public ID F08G5.5 NCBI
Target Description F08G5.5 /REP_DB=WormBase Gene ID /WP=CE05575 /TR=Q19222 /GB=CAA94585.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronyltransferase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027951 NCBI Caenorhabditis elegans F08G5.7 (F08G5.7) mRNA, complete cds. 11/11 None
SNAP00000043809 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12429877:12434306:1 9/11 None
GENEFINDER00000043822 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12429854:12435036:1 11/11 None
F08G5.7 ENSEMBL cdna:known chromosome:CEL140:IV:12432621:12434972:1 gene:F08G5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12429864-12434978(+) 94.22 100.0
Public Domain and Genome References
Gene Title
Ensembl F08G5.7
Entrez Gene 3564777 Entrez gene
SwissProt Q5WRN9 EMBL-EBI
WormBase CE37342 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAH60781 Hypothetical protein F08G5.7 [Caenorhabditis elegans] ref|NP_001023122.1| F08G5.7 [Caenorhabditis elegans] 0.0
blast CAA94585 Hypothetical protein F08G5.5 [Caenorhabditis elegans] ref|NP_502373.2| F08G5.5 [Caenorhabditis elegans] 1.0E-174
blast CAA94585 Hypothetical protein F08G5.5 [Caenorhabditis elegans] ref|NP_502373.2| F08G5.5 [Caenorhabditis elegans] 1.0E-162
blast CAE59860 Hypothetical protein CBG03335 [Caenorhabditis briggsae] 1.0E-141
blast CAH60781 Hypothetical protein F08G5.7 [Caenorhabditis elegans] ref|NP_001023122.1| F08G5.7 [Caenorhabditis elegans] 1.0E-138
blast CAE59860 Hypothetical protein CBG03335 [Caenorhabditis briggsae] 1.0E-132
blast CAH60781 Hypothetical protein F08G5.7 [Caenorhabditis elegans] ref|NP_001023122.1| F08G5.7 [Caenorhabditis elegans] 1.0E-109
blast CAE59861 Hypothetical protein CBG03336 [Caenorhabditis briggsae] 5.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.3E-34
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-29
Sequence
Target Sequence 
>C. ELEGANS:191939_AT
gggagacgacatctacaactacagtaaccccaacaacaacaaaagcagcaacaatcaaaa
catcaacaactacagtaaccccaactacagtaaccactacgaaagccccaaccacaacta
aaacttcgacttctactacaacacctaaatttaccactacaaccattcaaactaccaaaa
aaatcacaacttcaccgacttcaactacggcgtcaattccaataacttgcacatccaatt
gcccggttccagcggttaatttcaagggtttatgctacaagatgtgccggggtcttgtaa
agttcgaagacagctgtacatggtgtaatggaacaatggctacaatttctagtggagaag
aaaatgattttgtttccagggtctttggatcaaatgatgagacaacacgtcaaatctgga
ttggcaacactgaatccagtggttatctaaactggtctcaaggccaacctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAGACGACATCTACAACTACAGT 173 495 1802 Antisense
TACAGTAACCACTACGAAAGCCCCA 688 643 1887 Antisense
TCGACTTCTACTACAACACCTAAAT 103 601 1927 Antisense
TACCACTACAACCATTCAAACTACC 71 651 1953 Antisense
ACCGACTTCAACTACGGCGTCAATT 410 87 1995 Antisense
CGGCGTCAATTCCAATAACTTGCAC 118 243 2009 Antisense
TAACTTGCACATCCAATTGCCCGGT 170 639 2024 Antisense
CAATTGCCCGGTTCCAGCGGTTAAT 486 179 2037 Antisense
GATGTGCCGGGGTCTTGTAAAGTTC 402 409 2082 Antisense
AATGATTTTGTTTCCAGGGTCTTTG 276 165 2164 Antisense
TAAACTGGTCTCAAGGCCAACCTAC 613 637 2249 Antisense
Sequence Source Affymetrix Proprietary Database