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[191937_at]

Description K07C6.13 /REP_DB=WormBase Gene ID /WP=CE17184 /TR=O44644 /GB=AAB94255.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster 6grp_total > 36      4grp_total > 21      6grp_cgc > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 53
(3)
A 		16.9
(-3)
A 		20.5
(-2.4)
A 		24.7
(-1.7)
A 		36
B 41
(2.1)
A 		19.8
(-0.9)
A 		5.1
(-3)
A 		47.4
(3)
A 		42
C 4.7
(-3)
A 		22.4
(-1.2)
A 		10.8
(-2.4)
A 		65.1
(3)
A 		60
avr 32.9
(0.7) 		19.7
(-1.6) 		12.1
(-3) 		45.7
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 47
(3)
A 		25.1
(0)
A 		5.2
(-2.6)
A 		4.8
(-2.7)
A 		2.5
(-3)
A 		5.5
(-2.6)
A 		45
B 14.2
(-1.5)
A 		23.8
(0.6)
A 		12.1
(-1.9)
A 		35.3
(3)
A 		7
(-3)
A 		33.6
(2.6)
A 		28
C 10.1
(-1.8)
A 		38.3
(3)
A 		2.8
(-3)
A 		20.5
(-0)
A 		19.3
(-0.2)
A 		31.7
(1.9)
A 		36
avr 23.8
(1.6) 		29.1
(3) 		6.7
(-3) 		20.2
(0.6) 		9.6
(-2.2) 		23.6
(1.5) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.3
(3)
A 		3.7
(-3)
A 		5.4
(-2.3)
A 		3.6
(-3)
A 		16
B 13.1
(3)
A 		4.9
(-1.1)
A 		1.2
(-3)
A 		10.1
(1.5)
A 		12
C 1.5
(-3)
A 		6.4
(0.1)
A 		3.8
(-1.5)
A 		11
(3)
A 		10
avr 11.3
(3) 		5
(-1.8) 		3.5
(-3) 		8.2
(0.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.7
(2.9)
A 		8.9
(3)
A 		1.1
(-2.7)
A 		1.2
(-2.6)
A 		0.7
(-3)
A 		1.3
(-2.6)
A 		8
B 4.9
(-1.8)
A 		7.9
(0.1)
A 		2.9
(-3)
A 		9.3
(1)
A 		2.9
(-3)
A 		12.5
(3)
A 		10
C 3.8
(-1.3)
A 		11.7
(3)
A 		0.7
(-3)
A 		4.1
(-1.1)
A 		6.2
(0)
A 		10.6
(2.4)
A 		11
avr 5.8
(0.2) 		9.5
(3) 		1.6
(-3) 		4.9
(-0.5) 		3.3
(-1.7) 		8.1
(1.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191937_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15537
Sequence Type Exemplar sequence
Representative Public ID K07C6.13 NCBI
Target Description K07C6.13 /REP_DB=WormBase Gene ID /WP=CE17184 /TR=O44644 /GB=AAB94255.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000025772 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3923188:3925684:-1 11/11 None
K07C6.13 ENSEMBL cdna:known chromosome:CEL140:V:3923188:3924071:-1 gene:K07C6.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3923187-3924071(-) 100.0 100.0
Public Domain and Genome References
Ensembl K07C6.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32681 hypothetical protein K07C6.14 - Caenorhabditis elegans 1.0E-154
blast AAC69023 Hypothetical protein T25G12.9 [Caenorhabditis elegans] 1.0E-152
blast T32680 hypothetical protein K07C6.13 - Caenorhabditis elegans 1.0E-134
blast T32680 hypothetical protein K07C6.13 - Caenorhabditis elegans 1.0E-132
blast AAB94249 Serpentine receptor, class x protein 64 [Caenorhabditis elegans] ref|NP_504089.2| Serpentine Receptor, class X family member (srx-64) [Caenorhabditis elegans] 1.0E-102
blast AAF39928 Serpentine receptor, class x protein 62 [Caenorhabditis elegans] ref|NP_504114.1| Serpentine Receptor, class X family member (srx-62) [Caenorhabditis elegans] 6.0E-97
Protein Domains
Database ID Description E-Value
scop a.4.1.Recombinase DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Recombinase DNA-binding domain 6.99999977785866E-21
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 3.29999995231628
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 1.5E-5
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 2.8E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
K07C6.13 5 15-37,58-75,108-127,153-175,185-207
GENEFINDER00000025772 5 289-311,331-348,380-399,425-447,457-479
Sequence
Target Sequence 
>C. ELEGANS:191937_AT
ttctttgaaccgtttctgcgcagtatggttaccctatcattatcaaaacattttcagtag
tacgaacaccaaaatttttattggaataatctggctattcactggttctatggctatttt
tttctatgagaaaacttgtcatttctactatgaagagagcattcatttcttagttttcac
aaattccgagctctgtggatttattggttggtatggagactttctgaaaaacgcctccat
tgtcgcaatcgtaatgtctatcgacatattaactgtgctcaaagttcgcaaaatgaccag
aaaagctgccccgacaatcagcgatagagcacaacacaagatgtcttcacgggaaattag
gtttctcaagcagactgttacgcaaggctctgtttttatgttagagcttctgacatattt
ttttgttcctcaatactttgataacaaatggattgtcttttttgccacatcatttgcctg
ggtcgcagtgcacgctatcgacggaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTGAACCGTTTCTGCGCAGTA 11 689 114 Antisense
TGCGCAGTATGGTTACCCTATCATT 693 575 130 Antisense
GGCTATTCACTGGTTCTATGGCTAT 171 539 206 Antisense
GAGCATTCATTTCTTAGTTTTCACA 559 387 270 Antisense
AGTTTTCACAAATTCCGAGCTCTGT 577 61 285 Antisense
TGAAAAACGCCTCCATTGTCGCAAT 293 573 338 Antisense
AATGACCAGAAAAGCTGCCCCGACA 119 165 405 Antisense
GCCCCGACAATCAGCGATAGAGCAC 128 285 421 Antisense
AATGGATTGTCTTTTTTGCCACATC 358 163 560 Antisense
TTTTGCCACATCATTTGCCTGGGTC 214 677 573 Antisense
GCAGTGCACGCTATCGACGGAATGG 516 311 598 Antisense
Sequence Source Affymetrix Proprietary Database