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[191934_at] NADH ubiquinone oxidoreductase

Description F59C6.5 /REP_DB=WormBase Gene ID /WP=CE11464 /TR=Q93831 /GB=CAB01876.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=NADH ubiquinone oxidoreductase
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 06      6grp_total > 41      4grp_total > 08      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2942
1 2 3 4 range
A 7856.4
(-3)
P 		8066.7
(-2.5)
P 		8151.2
(-2.3)
P 		10336.1
(3)
P 		2480
B 8434.2
(0)
P 		7445.5
(-3)
P 		8835.3
(1.3)
P 		9404.8
(3)
P 		1959
C 7394.2
(-3)
P 		7457.2
(-2.6)
P 		7859.2
(-0.2)
P 		8397.7
(3)
P 		1004
avr 7894.9
(-2.2) 		7656.5
(-3) 		8281.9
(-0.8) 		9379.5
(3) 		1723

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4968
1 2 3 4 5 6 range
A 8705.2
(0.7)
P 		8902.5
(1)
P 		8822.6
(0.9)
P 		10458.6
(3)
P 		6779.9
(-1.8)
P 		5875.8
(-3)
P 		4583
B 7359.3
(-0.7)
P 		8390.9
(0.7)
P 		10226.9
(3)
P 		8545.2
(0.9)
P 		7280
(-0.8)
P 		5519.1
(-3)
P 		4708
C 8082.3
(-0.1)
P 		8185.3
(0)
P 		10487.4
(3)
P 		9952.1
(2.3)
P 		7038.6
(-1.5)
P 		5873.8
(-3)
P 		4614
avr 8048.9
(0.4) 		8492.9
(1) 		9845.6
(3) 		9652
(2.7) 		7032.8
(-1.1) 		5756.2
(-3) 		4089
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1445
1 2 3 4 range
A 2860.5
(3)
P 		1751.1
(-1.9)
P 		2130.9
(-0.2)
P 		1513
(-3)
P 		1348
B 2689.6
(3)
P 		1838.9
(-3)
P 		2047.4
(-1.5)
P 		2004.2
(-1.8)
P 		851
C 2447.7
(1.7)
P 		2144
(0.3)
P 		2739.2
(3)
P 		1416
(-3)
P 		1323
avr 2665.9
(3) 		1911.3
(-1.4) 		2305.8
(0.9) 		1644.4
(-3) 		1022

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1736
1 2 3 4 5 6 range
A 1604.7
(-2.4)
P 		3166.2
(3)
P 		1921.4
(-1.3)
P 		2652.5
(1.2)
P 		2045.9
(-0.9)
P 		1430.6
(-3)
P 		1736
B 2560.7
(0.4)
P 		2793
(1.9)
P 		2483.4
(-0.2)
P 		2263.3
(-1.6)
P 		2957.8
(3)
P 		2058
(-3)
P 		900
C 2995.7
(3)
P 		2497.6
(0.1)
P 		2669.2
(1.1)
P 		2001.4
(-2.8)
P 		2277.6
(-1.2)
P 		1966.3
(-3)
P 		1029
avr 2387
(0.4) 		2818.9
(3) 		2358
(0.2) 		2305.7
(-0.1) 		2427.1
(0.7) 		1818.3
(-3) 		1001
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191934_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1643
Sequence Type Exemplar sequence
Representative Public ID F59C6.5 NCBI
Target Description F59C6.5 /REP_DB=WormBase Gene ID /WP=CE11464 /TR=Q93831 /GB=CAB01876.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=NADH ubiquinone oxidoreductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060351 NCBI Caenorhabditis elegans F59C6.5 (F59C6.5) mRNA, complete cds. 11/11 None
SNAP00000029121 ENSEMBL cdna:SNAP chromosome:CEL140:I:10527482:10528734:1 11/11 None
GENEFINDER00000029138 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10527482:10528734:1 11/11 None
F59C6.5.1 ENSEMBL cdna:known chromosome:CEL140:I:10527479:10528880:1 gene:F59C6.5 11/11 None
F59C6.5.2 ENSEMBL cdna:known chromosome:CEL140:I:10527481:10528880:1 gene:F59C6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10527412-10528665(+) 100.0 100.0
Public Domain and Genome References
Gene Title NADH ubiquinone oxidoreductase
Ensembl F59C6.5
Entrez Gene 172933 Entrez gene
SwissProt Q93831 EMBL-EBI
WormBase CE11464 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585396_AT similar to NADH-ubiquinone oxidoreductase PDSW subunit (Complex I-PDSW) (CI-PDSW) cfa
CANINE_2:CFA.12474.1.S1_AT similar to NADH-ubiquinone oxidoreductase PDSW subunit (Complex I-PDSW) (CI-PDSW) cfa
CANINE_2:CFAAFFX.29778.1.S1_S_AT similar to NADH-ubiquinone oxidoreductase PDSW subunit (Complex I-PDSW) (CI-PDSW) cfa
DROSOPHILA_2:1634249_S_AT dm
DROSGENOME1:153168_AT dm
CHICKEN:GGA.11296.1.S1_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa gga
HG-U133_PLUS_2:228301_X_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa hs
HG-U133B:228301_X_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa hs
HG-U133B:223112_S_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa hs
HG-U133_PLUS_2:223112_S_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa hs
HU35KSUBA:C02053_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa hs
U133_X3P:G4164441_3P_S_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa hs
U133_X3P:HS.198274.1.S1_3P_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa hs
HG-U95B:43470_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa hs
HG-U95B:43471_G_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa hs
HG-U95C:49003_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa hs
MG-U74AV2:101525_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 mm
MG-U74AV2:162280_F_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 mm
MOE430A:1428322_A_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 mm
MOUSE430A_2:1428322_A_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 mm
MOUSE430_2:1428322_A_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 mm
MU19KSUBA:TC18512_F_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, mRNA (cDNA clone MGC:36216 IMAGE:4219237) mm
MU11KSUBA:D17920_RC_AT NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, mRNA (cDNA clone MGC:36216 IMAGE:4219237) mm
Protein Similarities
Method ID Description E-Value
blast CAB01876 Hypothetical protein F59C6.5 [Caenorhabditis elegans] ref|NP_492752.1| F59C6.5 [Caenorhabditis elegans] 1.0E-157
blast CAE58955 Hypothetical protein CBG02223 [Caenorhabditis briggsae] 1.0E-150
Sequence
Target Sequence 
>C. ELEGANS:191934_AT
gagactattgtgcaaccactcaacaacaagaaccgtctaccctactatcaccgtcaactt
acacgtgttccggaaatcgacgaatgcggagtgaacgacaaggcctgcttctacgaagcc
aatgagcagtaccgtcttgataaaatggtcgatggatttattctgcaaaccctccgccaa
cgtgttgatcggtgtatgctttacaacaatcctgatcattcaccatgtgccaaggttatt
gaggatatggaagagaatgagttgaatttcttcatgaaatacggagagttgggaggagaa
tccgatgttcgtgatgcttatatgaagcagaagcatcgaatgatctgggaacgacgtcat
ccagagattatggatgagcgtgcagctaagcttgctgatcataaagcacgacttgctaat
ggagagtttgactattcattctggaagaagggaatgttctatcaagacaagaagaactat
gagccaccatatgagttccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTATTGTGCAACCACTCAACA 405 393 169 Antisense
TCAACAACAAGAACCGTCTACCCTA 134 631 188 Antisense
CACCGTCAACTTACACGTGTTCCGG 45 201 217 Antisense
TGCGGAGTGAACGACAAGGCCTGCT 100 583 253 Antisense
GAAGCCAATGAGCAGTACCGTCTTG 319 343 283 Antisense
GATGGATTTATTCTGCAAACCCTCC 548 405 319 Antisense
CCTCCGCCAACGTGTTGATCGGTGT 496 263 339 Antisense
CAATCCTGATCATTCACCATGTGCC 593 181 375 Antisense
GAGAATCCGATGTTCGTGATGCTTA 507 391 464 Antisense
GGATGAGCGTGCAGCTAAGCTTGCT 383 513 540 Antisense
ATGAGCCACCATATGAGTTCCAAAT 629 45 647 Antisense
Sequence Source Affymetrix Proprietary Database