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[191930_at] olfactory receptor ODR-10 like

Description R08H2.2 /REP_DB=WormBase Gene ID /WP=CE16304 /TR=O17996 /GB=CAB04639.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=olfactory receptor ODR-10 like
Cluster 6grp_total > 44      4grp_total > 09      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 7.5
(-2.7)
A 		3.7
(-3)
A 		15.2
(-1.9)
A 		69
(3)
A 		65
B 1.6
(-3)
A 		6.9
(3)
A 		2.1
(-2.4)
A 		6.6
(2.7)
A 		5
C 1
(-3)
A 		7.5
(-2.2)
A 		1.3
(-3)
A 		48.5
(3)
A 		48
avr 3.4
(-3) 		6
(-2.6) 		6.2
(-2.6) 		41.4
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 31.4
(3)
A 		3.2
(-2.6)
A 		3.6
(-2.5)
A 		1.2
(-3)
A 		1.3
(-3)
A 		24.3
(1.6)
A 		30
B 3.3
(-2.6)
A 		2.3
(-2.8)
A 		31.4
(3)
A 		7.6
(-1.7)
A 		4.4
(-2.3)
A 		1.1
(-3)
A 		30
C 1.6
(-2.9)
A 		4.4
(-2.2)
A 		2.2
(-2.8)
A 		1.4
(-3)
A 		22.9
(3)
A 		2.1
(-2.8)
A 		22
avr 12.1
(2.8) 		3.3
(-3) 		12.4
(3) 		3.4
(-2.9) 		9.5
(1.1) 		9.2
(0.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.7
(-1.8)
A 		0.8
(-3)
A 		4
(-0.9)
A 		10.1
(3)
A 		9
B 0.5
(-3)
A 		1.7
(3)
A 		0.5
(-3)
A 		1.4
(1.5)
A 		1
C 0.3
(-3)
A 		2.2
(-1.6)
A 		0.5
(-2.8)
A 		8.2
(3)
A 		8
avr 1.2
(-3) 		1.6
(-2.6) 		1.7
(-2.4) 		6.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.8
(2.9)
A 		1.1
(-2.1)
A 		0.8
(-2.5)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		5.9
(3)
A 		6
B 1.2
(-2.3)
A 		0.8
(-2.7)
A 		7.6
(3)
A 		2
(-1.7)
A 		1.8
(-1.8)
A 		0.4
(-3)
A 		7
C 0.6
(-2.7)
A 		1.3
(-2.2)
A 		0.6
(-2.7)
A 		0.3
(-3)
A 		7.4
(3)
A 		0.7
(-2.7)
A 		7
avr 2.5
(1.2) 		1.1
(-2.5) 		3
(2.5) 		0.9
(-3) 		3.2
(3) 		2.3
(0.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191930_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14054
Sequence Type Exemplar sequence
Representative Public ID R08H2.2 NCBI
Target Description R08H2.2 /REP_DB=WormBase Gene ID /WP=CE16304 /TR=O17996 /GB=CAB04639.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=olfactory receptor ODR-10 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074420 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-88) (str-88) mRNA, complete cds. 11/11 None
SNAP00000012526 ENSEMBL cdna:SNAP chromosome:CEL140:V:15383939:15386425:-1 10/11 None
GENEFINDER00000012529 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15385025:15386425:-1 11/11 None
R08H2.2 ENSEMBL cdna:known chromosome:CEL140:V:15385025:15386425:-1 gene:R08H2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15385024-15386425(-) 100.0 100.0
Public Domain and Genome References
Gene Title olfactory receptor ODR-10 like
Gene Symbol str-88
Ensembl R08H2.2
Entrez Gene 187709 Entrez gene
SwissProt O17996 EMBL-EBI
WormBase CE16304 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04639 Hypothetical protein R08H2.2 [Caenorhabditis elegans] ref|NP_506821.1| Seven TM Receptor family member (str-88) [Caenorhabditis elegans] 0.0
blast AAG24149 Seven tm receptor protein 87 [Caenorhabditis elegans] ref|NP_505322.1| Seven TM Receptor family member (str-87) [Caenorhabditis elegans] 1.0E-131
blast T32119 hypothetical protein F59E11.16 - Caenorhabditis elegans 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.3E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.1E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506821.1 7 15-34,46-68,92-114,127-149,206-228,249-271,276-298
R08H2.2 7 15-34,46-68,92-114,127-149,206-228,249-271,276-298
SNAP00000012526 7 15-34,46-68,92-114,127-149,203-225,251-273,288-307
GENEFINDER00000012529 7 15-34,46-68,92-114,127-149,206-228,249-271,276-298
Sequence
Target Sequence 
>C. ELEGANS:191930_AT
tggcgcagcagtcagtggattctcattgggctacttgaaattgtgggcgtttcctgaacg
agagcatctgacaaatgagcttcgtgaggaattctcgcagttctataacttatcaatgga
agaagttgtgtacaatgggccaaacttctacaagtgcaatgagatcggcgaatgcgcgag
accctcagctgactggatcatgcagctcattctgactggtggtttggtcaactcagttat
catcatgtcctactgtggattctgctgttgtaagaagctccgggaaaatagaaaacacgc
aagctgccggacagctgatctgcaaaaccaattgatgatagctttaatcgttcaggcagt
catcccgatagtcttcatgtacatccctatacttctctttttcacaacaccaattttcca
tatcgggttcgggccatatatcaacgttgcaatggcgacactggcgatctacccaccaat
ggatcagtttttcatcatctacataataaaagacttccgaaccgctttaaaagagatctt
caaatgcggaaaagctgtttctgacgcatcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGCAGCAGTCAGTGGATTCTCA 405 545 426 Antisense
GAGATCGGCGAATGCGCGAGACCCT 352 395 586 Antisense
GGATCATGCAGCTCATTCTGACTGG 14 513 620 Antisense
GTCAACTCAGTTATCATCATGTCCT 164 465 652 Antisense
CATGTCCTACTGTGGATTCTGCTGT 316 209 669 Antisense
AGCTTTAATCGTTCAGGCAGTCATC 418 79 765 Antisense
CAGTCATCCCGATAGTCTTCATGTA 488 207 782 Antisense
CTTCTCTTTTTCACAACACCAATTT 305 219 817 Antisense
ATTTTCCATATCGGGTTCGGGCCAT 23 13 838 Antisense
TGCAATGGCGACACTGGCGATCTAC 335 577 873 Antisense
GAAAAGCTGTTTCTGACGCATCATC 246 355 974 Antisense
Sequence Source Affymetrix Proprietary Database