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[191929_at] UDP-glucuronosyltransferase

Description T04H1.8 /REP_DB=WormBase Gene ID /WP=CE13181 /TR=SW:Q22181 /GB=CAB01585.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_total > 13      4grp_total > 38      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 123.9
(3)
P 		86.6
(-0.3)
A 		56
(-3)
A 		89.6
(-0)
M 		68
B 116.4
(3)
P 		89.3
(0.7)
A 		44.5
(-3)
A 		69.5
(-0.9)
A 		72
C 198.5
(3)
P 		81.6
(-0.6)
A 		5.2
(-3)
A 		73.9
(-0.9)
A 		193
avr 146.3
(3) 		85.8
(-0.3) 		35.2
(-3) 		77.7
(-0.7) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 107.4
(1.9)
A 		122.9
(3)
A 		100.7
(1.4)
A 		90.1
(0.6)
A 		51.3
(-2.2)
A 		40.3
(-3)
A 		83
B 121.3
(3)
P 		86.1
(1.1)
P 		109.1
(2.3)
P 		83.5
(1)
A 		49
(-0.9)
A 		9.1
(-3)
A 		112
C 96.5
(-0.2)
P 		159.9
(3)
M 		72.2
(-1.5)
A 		69
(-1.6)
P 		41.8
(-3)
A 		42.3
(-3)
A 		118
avr 108.4
(2.1) 		123
(3) 		94
(1.1) 		80.9
(0.3) 		47.4
(-1.9) 		30.6
(-3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 45.1
(3)
P 		18.8
(-1.9)
A 		14.6
(-2.7)
A 		13.1
(-3)
M 		32
B 37.1
(3)
P 		22.1
(-0.4)
A 		10.3
(-3)
A 		14.8
(-2)
A 		27
C 65.7
(3)
P 		23.5
(-1)
A 		1.8
(-3)
A 		12.5
(-2)
A 		64
avr 49.3
(3) 		21.5
(-1.1) 		8.9
(-3) 		13.5
(-2.3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 19.8
(-1.2)
A 		43.7
(3)
A 		21.9
(-0.9)
A 		22.9
(-0.7)
A 		15.5
(-2)
A 		9.8
(-3)
A 		34
B 42.2
(3)
P 		28.7
(0.9)
P 		26.5
(0.6)
P 		22.1
(-0.1)
A 		19.9
(-0.4)
A 		3.4
(-3)
A 		39
C 35.8
(0.8)
P 		48.8
(3)
M 		18.4
(-2.2)
A 		13.9
(-2.9)
P 		13.5
(-3)
A 		14.2
(-2.9)
A 		35
avr 32.6
(1.5) 		40.4
(3) 		22.3
(-0.5) 		19.6
(-1) 		16.3
(-1.6) 		9.1
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13598
Sequence Type Exemplar sequence
Representative Public ID T04H1.8 NCBI
Target Description T04H1.8 /REP_DB=WormBase Gene ID /WP=CE13181 /TR=SW:Q22181 /GB=CAB01585.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073673 NCBI Caenorhabditis elegans T04H1.8 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000026404 ENSEMBL cdna:SNAP chromosome:CEL140:V:12258231:12263402:1 11/11 None
GENEFINDER00000026410 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12258327:12264620:1 11/11 None
T04H1.8 ENSEMBL cdna:known chromosome:CEL140:V:12261570:12263793:1 gene:T04H1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12261585-12263402(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-56
Ensembl T04H1.8
Entrez Gene 188073 Entrez gene
SwissProt Q22181 EMBL-EBI
WormBase CE31985 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01585 Hypothetical protein T04H1.8 [Caenorhabditis elegans] ref|NP_506074.2| T04H1.8 [Caenorhabditis elegans] sp|Q22181|UGT12_CAEEL Putative UDP-glucuronosyltransferase UGT12 precursor (UDPGT) 0.0
blast CAE75431 Hypothetical protein CBG23424 [Caenorhabditis briggsae] 0.0
blast CAB01584 Hypothetical protein T04H1.7 [Caenorhabditis elegans] ref|NP_506073.2| T04H1.7 [Caenorhabditis elegans] sp|Q22180|UGT11_CAEEL Putative UDP-glucuronosyltransferase UGT11 precursor (UDPGT) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.7E-14
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.1E-9
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.7E-14
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.1E-9
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.7E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506074.2 2 2-24,486-508
T04H1.8 2 2-24,486-508
SNAP00000026404 2 5-27,123-145
GENEFINDER00000026410 2 91-113,1052-1074
Sequence
Target Sequence 
>C. ELEGANS:191929_AT
gagtatcaaactcttctctctgatcctcgtcctaaagtgctcgtatcatttggtactgca
gccacatcatctcatatgcctcaaaatttgaaaaattcgttgatgactgcaatgaaacaa
atgaacaatgttttgttcatatggaaatatgaaatggaagataatttcacaaaacaggag
gagctcacaacaaatataattttcaaaaagtttttgccgcagactgatttattagctagc
agcaaaattgacctgtttgttacccattgtggccagaacagcttacttgaagcatttaat
tctggagttcgagtgttagcagttccactatttggagaccaacaccgaaatgcaaagctt
gcctttgaaaatggattaattgaaattcttccgaaatctgacatcgaaactccggcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTATCAAACTCTTCTCTCTGATC 323 399 853 Antisense
ATCCTCGTCCTAAAGTGCTCGTATC 461 39 875 Antisense
TGCAGCCACATCATCTCATATGCCT 108 579 909 Antisense
GCCGCAGACTGATTTATTAGCTAGC 484 285 1068 Antisense
AATTGACCTGTTTGTTACCCATTGT 698 177 1098 Antisense
TACCCATTGTGGCCAGAACAGCTTA 390 649 1113 Antisense
GGAGTTCGAGTGTTAGCAGTTCCAC 473 517 1156 Antisense
GCAGTTCCACTATTTGGAGACCAAC 695 311 1171 Antisense
GGAGACCAACACCGAAATGCAAAGC 410 519 1186 Antisense
GAAATTCTTCCGAAATCTGACATCG 592 363 1234 Antisense
ATCTGACATCGAAACTCCGGCGAAA 65 35 1248 Antisense
Sequence Source Affymetrix Proprietary Database