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[191923_at] Mitochondrial carrier protein

Description T10F2.2 /REP_DB=WormBase Gene ID /WP=CE02041 /TR=Q10050 /GB=AAK21466.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Mitochondrial carrier protein
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 73      6grp_total > 58      4grp_total > 09      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 438
1 2 3 4 range
A 576.8
(-3)
P 		653.6
(-1.9)
P 		600.8
(-2.7)
P 		1014.4
(3)
P 		438
B 589.5
(-2.6)
P 		578.4
(-3)
P 		631.8
(-1.3)
P 		766.4
(3)
P 		188
C 657.5
(-3)
P 		690.1
(-2.1)
P 		731
(-1.1)
P 		884
(3)
P 		227
avr 607.9
(-3) 		640.7
(-2.3) 		654.5
(-2) 		888.3
(3) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 670.6
(1.9)
P 		589.4
(-1.2)
P 		600.2
(-0.8)
P 		699.6
(3)
P 		543.2
(-3)
P 		650.6
(1.1)
P 		156
B 591.7
(0.2)
P 		530.9
(-1.8)
P 		492.2
(-3)
P 		521.5
(-2.1)
P 		563.3
(-0.7)
P 		679.5
(3)
P 		187
C 570.7
(-0.7)
P 		560.6
(-1.3)
P 		560.2
(-1.3)
P 		637.6
(3)
P 		573.7
(-0.6)
P 		530.3
(-3)
P 		107
avr 611
(2.2) 		560.3
(-2.2) 		550.9
(-3) 		619.6
(3) 		560.1
(-2.2) 		620.1
(3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 210
(3)
P 		141.9
(-3)
P 		157.1
(-1.7)
P 		148.5
(-2.4)
P 		68
B 188
(3)
P 		142.8
(-3)
P 		146.4
(-2.5)
P 		163.3
(-0.3)
P 		45
C 217.6
(0.9)
P 		198.4
(-0.2)
P 		254.8
(3)
P 		149
(-3)
P 		106
avr 205.2
(3) 		161
(-2.1) 		186.1
(0.8) 		153.6
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 123.6
(-3)
P 		209.6
(3)
P 		130.7
(-2.5)
P 		177.4
(0.8)
P 		163.9
(-0.2)
P 		158.4
(-0.6)
P 		86
B 205.9
(0.9)
P 		176.7
(-0.4)
P 		119.5
(-3)
P 		138.1
(-2.2)
P 		228.8
(1.9)
P 		253.4
(3)
P 		134
C 211.5
(3)
P 		171.1
(0.1)
P 		142.6
(-2)
P 		128.2
(-3)
P 		185.6
(1.1)
P 		177.5
(0.6)
P 		83
avr 180.3
(1.5) 		185.8
(2) 		130.9
(-3) 		147.9
(-1.4) 		192.8
(2.7) 		196.4
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7763
Sequence Type Exemplar sequence
Representative Public ID T10F2.2 NCBI
Target Description T10F2.2 /REP_DB=WormBase Gene ID /WP=CE02041 /TR=Q10050 /GB=AAK21466.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Mitochondrial carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065693(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065693 NCBI Caenorhabditis elegans T10F2.2 (T10F2.2) mRNA, complete cds. 11/11 None
SNAP00000017020 ENSEMBL cdna:SNAP chromosome:CEL140:III:5163917:5165248:-1 11/11 None
T10F2.2 ENSEMBL cdna:known chromosome:CEL140:III:5163917:5165248:-1 gene:T10F2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5163915-5165247(-) 100.0 100.0
Public Domain and Genome References
Gene Title Mitochondrial carrier protein
Ensembl T10F2.2
Entrez Gene 188387 Entrez gene
SwissProt Q10050 EMBL-EBI
WormBase CE02041 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.9905.1.S1_S_AT similar to Mitochondrial ornithine transporter 1 (Solute carrier family 25, member 15) cfa
CANINE_2:CFAAFFX.9910.1.S1_AT similar to Mitochondrial ornithine transporter 1 (Solute carrier family 25, member 15) cfa
DROSOPHILA_2:1635870_AT dm
DROSGENOME1:144814_AT dm
CHICKEN:GGA.6388.1.S1_S_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 gga
CHICKEN:GGAAFFX.12771.1.S1_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 gga
HG-U133B:222705_S_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
HG-U133_PLUS_2:222705_S_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
HG-U133_PLUS_2:218653_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
HG-U133A:218653_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
HG-FOCUS:218653_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
HG-U133A_2:218653_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
HU35KSUBC:RC_AA400864_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
HU35KSUBD:RC_AA177105_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
U133_X3P:G7657584_3P_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
U133_X3P:G12803730_3P_A_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
HG-U95B:54978_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
HG-U95C:62682_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 hs
HU35KSUBC:RC_C20961_AT Hypothetical protein LOC283507 hs
MG-U74AV2:104007_AT solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 mm
MOE430A:1420967_AT solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 mm
MOUSE430A_2:1420967_AT solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 mm
MOUSE430_2:1420967_AT solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 mm
MOE430A:1420966_AT solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 mm
MOUSE430A_2:1420966_AT solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 mm
MOUSE430_2:1420966_AT solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 mm
MU11KSUBA:AA213259_S_AT Solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 (Slc25a15), mRNA mm
MU19KSUBA:TC24228_AT Solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 (Slc25a15), mRNA mm
MU19KSUBA:TC24228_G_AT Solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 (Slc25a15), mRNA mm
RAE230B:1397647_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
RAT230_2:1397647_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
RAE230B:1393947_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
RAT230_2:1393947_AT solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
RAE230A:1374800_AT Solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
RAT230_2:1374800_AT Solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
RAE230B:1381124_AT Solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
RAT230_2:1381124_AT Solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
RAE230B:1393342_AT Solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
RAT230_2:1393342_AT Solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
RG-U34C:RC_AA819672_AT Solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
RG-U34B:RC_AA998234_AT Solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498094 T10F2.2 [Caenorhabditis elegans] gb|AAK21466.1| Hypothetical protein T10F2.2 [Caenorhabditis elegans] 1.0E-166
blast CAE73777 Hypothetical protein CBG21322 [Caenorhabditis briggsae] 1.0E-153
blast AAF46607 CG1628-PB [Drosophila melanogaster] ref|NP_572639.2| CG1628-PB [Drosophila melanogaster] 3.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 3.4E-24
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 5.7E-27
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.8E-25
Sequence
Target Sequence 
>C. ELEGANS:191923_AT
tcttcactgcctatggttactgccaaaaaacaattgccacactgaatggactcgaagatg
tcagacaaatgacaccattggaaaatgcattctccggatctcttgccgcagtttttgcag
ctaccgtactctgtccaacagaacttgtcaaatgtaaacttcaagcagctcgtgaaatga
agaagaagtgtacaccattctctgtttgtcgggatatcatgaaggatactggtgtccgtg
gattctttgttggaatgactccgactcttgcaagagaggttcctggttatttcttcttct
ttggagcctacgaaacatgccgtttcttattgactgatgaaggacagaaaaaggaagaaa
ttggacttgtgaagacagcaatggctggatcagttggtggtatggcattatggacatcca
tttatccagcagatgtcgttaaatcgagaatgcaagtcaccggaggaggaacttttatgt
ctactttgggcgctgtcgttaaagagaatggaattcgtggactctacaaaggacttctac
caaccaatctaagaacttgcttcgcttctggatgtcttttcgtcgcttatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCACTGCCTATGGTTACTGCCA 709 615 293 Antisense
AAAATGCATTCTCCGGATCTCTTGC 299 133 374 Antisense
TACACCATTCTCTGTTTGTCGGGAT 113 633 483 Antisense
GGATACTGGTGTCCGTGGATTCTTT 278 507 516 Antisense
GTTGGAATGACTCCGACTCTTGCAA 287 435 541 Antisense
TTCCTGGTTATTTCTTCTTCTTTGG 364 699 572 Antisense
AACATGCCGTTTCTTATTGACTGAT 280 137 606 Antisense
GAACTTTTATGTCTACTTTGGGCGC 172 349 761 Antisense
CAAAGGACTTCTACCAACCAATCTA 594 191 819 Antisense
TAAGAACTTGCTTCGCTTCTGGATG 14 639 842 Antisense
TGGATGTCTTTTCGTCGCTTATGAA 147 551 861 Antisense
Sequence Source Affymetrix Proprietary Database