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[191922_at] protein-tyrosine phosphatase

Description Y39A3A.4 /REP_DB=WormBase Gene ID /WP=CE21641 /TR=Q9N520 /GB=AAF60511.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 30      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 9.1
(-3)
A 		17.7
(-1.5)
A 		43.1
(3)
A 		11.1
(-2.6)
A 		34
B 22.2
(-0.7)
A 		20.3
(-1)
A 		44.9
(3)
A 		8.2
(-3)
A 		37
C 8
(-1.9)
A 		12.8
(3)
A 		8.4
(-1.5)
A 		6.9
(-3)
A 		6
avr 13.1
(-1.9) 		16.9
(-0.9) 		32.1
(3) 		8.7
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 8.6
(-2.4)
A 		51.4
(3)
A 		20.6
(-0.9)
A 		44.7
(2.2)
A 		7
(-2.6)
A 		3.9
(-3)
A 		48
B 6.6
(-2.7)
A 		27.9
(1.4)
A 		33.8
(2.6)
A 		36
(3)
A 		11.8
(-1.7)
A 		4.8
(-3)
A 		31
C 35.2
(3)
A 		19.9
(-0.1)
A 		5.4
(-3)
A 		6.8
(-2.7)
A 		12.3
(-1.6)
A 		5.2
(-3)
A 		30
avr 16.8
(-0.4) 		33.1
(3) 		19.9
(0.2) 		29.2
(2.2) 		10.4
(-1.8) 		4.6
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.3
(-1.9)
A 		3.8
(-1.6)
A 		11.3
(3)
A 		1.6
(-3)
A 		10
B 7.1
(0.7)
A 		5
(-0.7)
A 		10.4
(3)
A 		1.7
(-3)
A 		9
C 2.7
(0.6)
A 		3.7
(3)
A 		2.9
(1.1)
A 		1.2
(-3)
A 		3
avr 4.4
(-0.4) 		4.2
(-0.6) 		8.2
(3) 		1.5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.6
(-2.8)
A 		18.3
(3)
A 		4.5
(-1.8)
A 		11.3
(0.6)
A 		2.1
(-2.6)
A 		1
(-3)
A 		17
B 2.3
(-2.6)
A 		9.3
(2.8)
A 		8.2
(2)
A 		9.5
(3)
A 		4.8
(-0.7)
A 		1.8
(-3)
A 		8
C 13.1
(3)
A 		6.1
(-0.6)
A 		1.4
(-3)
A 		1.4
(-3)
A 		4
(-1.7)
A 		1.7
(-2.8)
A 		12
avr 5.7
(-0.4) 		11.2
(3) 		4.7
(-1) 		7.4
(0.6) 		3.6
(-1.7) 		1.5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191922_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8143
Sequence Type Exemplar sequence
Representative Public ID Y39A3A.4 NCBI
Target Description Y39A3A.4 /REP_DB=WormBase Gene ID /WP=CE21641 /TR=Q9N520 /GB=AAF60511.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065096(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065096 NCBI Caenorhabditis elegans Y39A3A.4 (Y39A3A.4) mRNA, complete cds. 11/11 None
Y39A3A.4 ENSEMBL cdna:known chromosome:CEL140:III:2072997:2076508:-1 gene:Y39A3A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001104 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2072996-2076508(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl Y39A3A.4
Entrez Gene 189720 Entrez gene
SwissProt Q9N520 EMBL-EBI
WormBase CE21641 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60511 Hypothetical protein Y39A3A.4 [Caenorhabditis elegans] ref|NP_497497.1| Y39A3A.4 [Caenorhabditis elegans] 0.0
blast AAK29923 Hypothetical protein Y48G9A.9a [Caenorhabditis elegans] ref|NP_001022892.1| Y48G9A.9a [Caenorhabditis elegans] 1.0E-111
blast AAP86612 Hypothetical protein Y48G9A.9b [Caenorhabditis elegans] ref|NP_001022893.1| Y48G9A.9b [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.8E-48
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.3E-25
Sequence
Target Sequence 
>C. ELEGANS:191922_AT
aagtaggcagagaaggccgcccgagatactggccatcactgggcgtaacagaaacatacg
gttgcatacgtgtcacaaattttagtgaatcgtccgaggaatttgaaatttgcaatttag
cagtgacatttgtgcccgacaatgtgccggtcgatgagcagcccgcgaacttggaggggc
ttagagtcagcctgattaaatggccgaattggccggattgcggtgtgcccgacgaaaaat
gtcatacagtaccccagcggctgctggctcaggtgcggcacgggccttgtgtggtacatt
gctccgccgggaaggaccggttgtacgtagtatgtctagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTAGGCAGAGAAGGCCGCCCGAG 657 155 479 Antisense
CAGAGAAGGCCGCCCGAGATACTGG 24 205 486 Antisense
GAGATACTGGCCATCACTGGGCGTA 441 393 501 Antisense
CACAAATTTTAGTGAATCGTCCGAG 216 193 552 Antisense
GTGAATCGTCCGAGGAATTTGAAAT 475 419 563 Antisense
GAGCAGCCCGCGAACTTGGAGGGGC 83 389 634 Antisense
GGAGGGGCTTAGAGTCAGCCTGATT 5 515 651 Antisense
AGCCTGATTAAATGGCCGAATTGGC 151 71 667 Antisense
GAATTGGCCGGATTGCGGTGTGCCC 631 321 684 Antisense
GGAAGGACCGGTTGTACGTAGTATG 686 523 788 Antisense
CCGGTTGTACGTAGTATGTCTAGAC 221 263 795 Antisense
Sequence Source Affymetrix Proprietary Database