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[191921_s_at] UDP-glucuronosyltransferase

Description F35H8.6 /REP_DB=WormBase Gene ID /WP=CE01575 /TR=SW:Q20086 /GB=CAA85328.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 44      6grp_total > 61      4grp_total > 34      6grp_highest_sub > 04      6grp_cgc > 84      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 790
1 2 3 4 range
A 2057.4
(-3)
P 		2581.6
(1.3)
P 		2405.7
(-0.2)
P 		2792.3
(3)
P 		735
B 2095.3
(-3)
P 		2503.2
(3)
P 		2343.4
(0.6)
P 		2383.7
(1.2)
P 		408
C 2002.7
(-3)
P 		2655.1
(3)
P 		2410.5
(0.8)
P 		2356.5
(0.3)
P 		652
avr 2051.8
(-3) 		2580
(3) 		2386.5
(0.8) 		2510.8
(2.2) 		528

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1525
1 2 3 4 5 6 range
A 1649.3
(-1.2)
P 		1761.7
(-0.6)
P 		2463.2
(3)
P 		2299.9
(2.2)
P 		2057.5
(0.9)
P 		1300.4
(-3)
P 		1163
B 1591
(-2.6)
P 		1851.2
(-1.3)
P 		2092.7
(-0.1)
P 		2708.6
(3)
P 		1830.4
(-1.4)
P 		1514.3
(-3)
P 		1194
C 1477.3
(-1.6)
P 		1826.5
(0)
P 		2306.4
(2.3)
P 		2458.3
(3)
P 		1856.5
(0.2)
P 		1183.7
(-3)
P 		1275
avr 1572.5
(-1.8) 		1813.1
(-0.5) 		2287.4
(2) 		2488.9
(3) 		1914.8
(0) 		1332.8
(-3) 		1156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 443
1 2 3 4 range
A 749.1
(3)
P 		560.4
(-0.3)
P 		628.9
(0.9)
P 		408.7
(-3)
P 		340
B 668.2
(3)
P 		618.2
(1.1)
P 		543
(-1.7)
P 		508
(-3)
P 		160
C 663
(0.6)
P 		763.3
(2)
P 		840.1
(3)
P 		397.3
(-3)
P 		443
avr 693.4
(3) 		647.3
(1.9) 		670.7
(2.5) 		438
(-3) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 440
1 2 3 4 5 6 range
A 304
(-3)
P 		626.6
(3)
P 		536.4
(1.3)
P 		583.3
(2.2)
P 		620.9
(2.9)
P 		316.6
(-2.8)
P 		323
B 553.6
(-1.8)
P 		616.2
(-0.2)
P 		508.2
(-3)
P 		717.4
(2.3)
P 		743.7
(3)
P 		564.7
(-1.6)
P 		236
C 547.6
(1.4)
P 		557.3
(1.7)
P 		587
(2.6)
P 		494.4
(-0.1)
P 		600.7
(3)
P 		396.3
(-3)
P 		204
avr 468.4
(-1.9) 		600
(1.6) 		543.9
(0.1) 		598.4
(1.5) 		655.1
(3) 		425.9
(-3) 		229
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191921_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3210
Sequence Type Exemplar sequence
Representative Public ID F35H8.6 NCBI
Target Description F35H8.6 /REP_DB=WormBase Gene ID /WP=CE01575 /TR=SW:Q20086 /GB=CAA85328.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063658 NCBI Caenorhabditis elegans F35H8.6 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000035513 ENSEMBL cdna:SNAP chromosome:CEL140:II:9584404:9586687:-1 11/11 None
F35H8.6 ENSEMBL cdna:known chromosome:CEL140:II:9584297:9586694:-1 gene:F35H8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9584400-9586684(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-58
Ensembl F35H8.6
Entrez Gene 174507 Entrez gene
SwissProt Q20086 EMBL-EBI
WormBase CE00984 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.18944.1.S1_S_AT similar to 2-hydroxyacylsphingosine 1-beta-galactosyltransferase precursor (UDP-galactose-ceramide galactosyltransferase) (Ceramide UDP-galactosyltransferase) (Cerebroside synthase) cfa
DROSOPHILA_2:1639147_S_AT dm
CHICKEN:GGA.183.1.S1_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) gga
HG-U133_PLUS_2:208358_S_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
HG-U133A:208358_S_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
HG-FOCUS:208358_S_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
HG-U133A_2:208358_S_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
HUGENEFL:U30930_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
U133_X3P:G4507826_3P_A_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
HG-U95AV2:36363_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
HG-U133_PLUS_2:228956_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
HG-U133B:228956_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
HU35KSUBC:RC_N22272_S_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
HU35KSUBD:RC_N40918_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
U133_X3P:HS.274293.0.S1_3P_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
HG-U95B:45183_AT UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) hs
MOUSE430_2:1419063_AT UDP galactosyltransferase 8A mm
MOE430A:1419063_AT UDP galactosyltransferase 8A mm
MOUSE430A_2:1419063_AT UDP galactosyltransferase 8A mm
MU11KSUBB:X92122_S_AT UDP galactosyltransferase 8A mm
MG-U74AV2:98872_AT UDP galactosyltransferase 8A mm
MG-U74CV2:138069_AT UDP galactosyltransferase 8A mm
MG-U74CV2:169305_I_AT UDP galactosyltransferase 8A mm
MOE430A:1419064_A_AT UDP galactosyltransferase 8A mm
MOUSE430A_2:1419064_A_AT UDP galactosyltransferase 8A mm
MOUSE430_2:1419064_A_AT UDP galactosyltransferase 8A mm
RG-U34A:RC_AI228110_S_AT UDP-glucuronosyltransferase 8 rn
RG-U34A:U07683_AT UDP-glucuronosyltransferase 8 rn
RAE230A:1368858_AT UDP-glucuronosyltransferase 8 rn
RAT230_2:1368858_AT UDP-glucuronosyltransferase 8 rn
RAE230A:1368857_AT UDP-glucuronosyltransferase 8 rn
RAT230_2:1368857_AT UDP-glucuronosyltransferase 8 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85328 Hypothetical protein F35H8.6 [Caenorhabditis elegans] ref|NP_496059.2| F35H8.6 [Caenorhabditis elegans] sp|Q20086|UGT5_CAEEL Putative UDP-glucuronosyltransferase UGT5 precursor (UDPGT) 0.0
blast T21823 hypothetical protein F35H8.6 - Caenorhabditis elegans 0.0
blast CAE57904 Hypothetical protein CBG00954 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.6E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496059.2 2 5-27,481-503
F35H8.6 2 5-27,481-503
SNAP00000035513 2 5-27,481-503
Sequence
Target Sequence 
>C. ELEGANS:191921_S_AT
tgccatcaaatctactcgtcaagccatggcttccacttcaagacctactaggtcatcaaa
agtgccgatgccacgtgtcacatggaggattgaacagtgtcattgaatcagtttatcacg
gagttccagttgttggagtaccattgacttctcgtggttatgataatttactgagaatca
ctgcacgagatagtggagtcatggtggagaaatcggagttcagtggggaaatattgactg
ccgctattaatgaaaacgttcaaattcaaataattgttttcagatacaagaaggaaatgt
taatcttccaagatatggtcatcgatgttccatacactgaactttatcacgctgcgtttt
gggttgaattcatcgaacggcaccaggaagttccacacgctagaagtggagcagatcatt
tgaattttcttcaatatttcctcgttgatgtcattgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCATCAAATCTACTCGTCAAGCC 153 587 1031 Antisense
TCAAGCCATGGCTTCCACTTCAAGA 710 629 1049 Antisense
CAAAAGTGCCGATGCCACGTGTCAC 194 191 1087 Antisense
GTTGGAGTACCATTGACTTCTCGTG 208 437 1162 Antisense
GTGGGGAAATATTGACTGCCGCTAT 484 489 1253 Antisense
TGGTCATCGATGTTCCATACACTGA 315 551 1346 Antisense
TACACTGAACTTTATCACGCTGCGT 586 641 1363 Antisense
CACGCTGCGTTTTGGGTTGAATTCA 607 197 1378 Antisense
GTTGAATTCATCGAACGGCACCAGG 478 439 1393 Antisense
GCACCAGGAAGTTCCACACGCTAGA 276 315 1410 Antisense
TATTTCCTCGTTGATGTCATTGCCT 184 663 1465 Antisense
Sequence Source Affymetrix Proprietary Database