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[191919_at] transcription factor AP-2 like

Description F28C6.1 /REP_DB=WormBase Gene ID /WP=CE03272 /TR=Q19863 /GB=CAA92669.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcription factor AP-2 like
Cluster 6grp_total > 49      4grp_total > 08      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 30.5
(-3)
A 		69.5
(3)
A 		66.2
(2.5)
A 		47
(-0.5)
A 		39
B 51.4
(-2.2)
A 		45.4
(-2.9)
A 		44.1
(-3)
A 		96.1
(3)
A 		52
C 32
(-1.7)
A 		5.2
(-3)
A 		45.8
(-1)
A 		126.3
(3)
A 		121
avr 38
(-3) 		40
(-2.8) 		52
(-1.4) 		89.8
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 51.8
(2.9)
A 		3.2
(-3)
A 		29.5
(0.2)
A 		11.3
(-2)
A 		43.3
(1.8)
A 		52.9
(3)
A 		50
B 77.6
(3)
A 		32.7
(-0.9)
A 		15.7
(-2.4)
A 		64.3
(1.8)
A 		8.3
(-3)
A 		56.8
(1.2)
P 		69
C 10
(-2.5)
A 		60.9
(3)
A 		13.8
(-2.1)
A 		5.5
(-3)
A 		53.3
(2.2)
A 		44.7
(1.2)
P 		55
avr 46.5
(2.1) 		32.3
(-0.6) 		19.7
(-3) 		27
(-1.6) 		35
(-0.1) 		51.5
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.1
(-0.6)
A 		15.1
(1.7)
A 		17.3
(3)
A 		6.9
(-3)
A 		10
B 16.4
(0.6)
A 		11.2
(-2.4)
A 		10.2
(-3)
A 		20.5
(3)
A 		10
C 10.6
(-0.2)
A 		1.5
(-3)
A 		16
(1.4)
A 		21.3
(3)
A 		20
avr 12.7
(-0) 		9.3
(-3) 		14.5
(1.5) 		16.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 9.5
(1.2)
A 		1.1
(-3)
A 		6.4
(-0.4)
A 		2.9
(-2.1)
A 		13.1
(3)
A 		12.9
(2.9)
A 		12
B 27
(3)
A 		10.9
(-1.1)
A 		3.8
(-2.9)
A 		17
(0.5)
A 		3.4
(-3)
A 		21.2
(1.5)
P 		24
C 3.7
(-2.1)
A 		18.6
(3)
A 		3.5
(-2.2)
A 		1.1
(-3)
A 		17.2
(2.5)
A 		15
(1.8)
P 		18
avr 13.4
(1.5) 		10.2
(-0.2) 		4.6
(-3) 		7
(-1.8) 		11.2
(0.4) 		16.4
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191919_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3421
Sequence Type Exemplar sequence
Representative Public ID F28C6.1 NCBI
Target Description F28C6.1 /REP_DB=WormBase Gene ID /WP=CE03272 /TR=Q19863 /GB=CAA92669.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcription factor AP-2 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063417 NCBI Caenorhabditis elegans F28C6.1 (F28C6.1) mRNA, complete cds. 11/11 None
SNAP00000038089 ENSEMBL cdna:SNAP chromosome:CEL140:II:8591095:8592715:1 11/11 None
GENEFINDER00000038106 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8591095:8592715:1 11/11 None
F28C6.1 ENSEMBL cdna:known chromosome:CEL140:II:8591084:8592832:1 gene:F28C6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8591091-8592712(+) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor AP-2 like
Ensembl F28C6.1
Entrez Gene 174376 Entrez gene
SwissProt Q19863 EMBL-EBI
WormBase CE03272 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92669 Hypothetical protein F28C6.1 [Caenorhabditis elegans] ref|NP_495818.1| F28C6.1 [Caenorhabditis elegans] 0.0
blast CAA92668 Hypothetical protein F28C6.2 [Caenorhabditis elegans] ref|NP_495819.1| F28C6.2 [Caenorhabditis elegans] 1.0E-172
blast CAE57573 Hypothetical protein CBG00551 [Caenorhabditis briggsae] 2.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR004979 EMBL-EBI Transcription factor AP-2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191919_AT
ggtgctcaccgactacaatattactgtgagaacaatgcagaggcaacgaaaagtgacatg
tttctctcctttcttggaagaagaagcaactgcattggcacgtgatcttgactcaattac
cgaagagttccttccaatcgacgccattgctctggaaatgcttgaaaagctaatcttcaa
caacaaaaatttggatatttgtttaagaattttgaagaatacgaataaaacaataactcg
agtcatcaaaactcttgaagttcgtcaaccaaagataactggacaaaaggaaaagctcaa
aggaaattccctcgatttgtcctaccacaatttttcactcaccacgcacggattcggcca
tccaaattctttatcccactacagaagctatcagaagattgttgaacaagctgctcttta
ctgtgaaaaaatgcagaaaggggcatccttgccatcaaaagagtatctgatacctggaca
gaagccgtttgaaaatatgtcaaacgagttttttgtggaatggcggatgagatcttacca
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCTCACCGACTACAATATTACT 490 501 876 Antisense
GTTTCTCTCCTTTCTTGGAAGAAGA 40 451 935 Antisense
TTCCAATCGACGCCATTGCTCTGGA 645 701 1007 Antisense
GCTCAAAGGAAATTCCCTCGATTTG 177 299 1170 Antisense
TGTCCTACCACAATTTTTCACTCAC 134 557 1193 Antisense
ATTCGGCCATCCAAATTCTTTATCC 458 9 1227 Antisense
TTATCCCACTACAGAAGCTATCAGA 327 679 1246 Antisense
GAACAAGCTGCTCTTTACTGTGAAA 329 353 1279 Antisense
GCAGAAAGGGGCATCCTTGCCATCA 281 289 1308 Antisense
ATACCTGGACAGAAGCCGTTTGAAA 155 23 1345 Antisense
GAATGGCGGATGAGATCTTACCACA 139 333 1393 Antisense
Sequence Source Affymetrix Proprietary Database