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[191918_at] acetylglucosaminyltransferase

Description F30A10.4 /REP_DB=WormBase Gene ID /WP=CE09805 /TR=Q93643 /GB=CAB03022.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase
Cluster 6grp_total > 52      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 11.2
(-1.9)
A 		47.1
(3)
A 		8.2
(-2.3)
A 		3
(-3)
A 		44
B 15.9
(-0.4)
A 		34
(3)
A 		6.9
(-2)
A 		1.7
(-3)
A 		32
C 3.2
(-2.6)
A 		2.1
(-2.9)
A 		1.9
(-3)
A 		19.9
(3)
A 		18
avr 10.1
(-1.8) 		27.7
(3) 		5.7
(-3) 		8.2
(-2.3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 7.4
(-1.6)
A 		1.9
(-3)
A 		25.7
(3)
A 		3.8
(-2.5)
A 		4.6
(-2.3)
A 		11.1
(-0.7)
A 		24
B 15.3
(-1.2)
A 		7.3
(-2.2)
A 		48.3
(3)
A 		2.2
(-2.9)
A 		1.2
(-3)
A 		2.5
(-2.8)
A 		47
C 21.5
(-0.3)
A 		12.6
(-1.5)
A 		37.1
(1.7)
A 		47.5
(3)
A 		0.7
(-3)
A 		1.9
(-2.8)
A 		47
avr 14.7
(-0.8) 		7.3
(-2.1) 		37
(3) 		17.8
(-0.3) 		2.2
(-3) 		5.2
(-2.5) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.1
(-0.7)
A 		10.2
(3)
A 		2.1
(-2)
A 		0.4
(-3)
A 		10
B 5.1
(0.5)
A 		8.4
(3)
A 		1.6
(-2.1)
A 		0.4
(-3)
A 		8
C 1.1
(-1.9)
A 		0.6
(-3)
A 		0.6
(-3)
A 		3.4
(3)
A 		3
avr 3.4
(-0.6) 		6.4
(3) 		1.4
(-3) 		1.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.4
(-2.1)
A 		0.7
(-3)
A 		5.6
(3)
A 		1
(-2.6)
A 		1.4
(-2.1)
A 		2.7
(-0.6)
A 		5
B 5.3
(-0.4)
A 		2.4
(-2)
A 		11.7
(3)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		0.9
(-2.8)
A 		11
C 8
(2)
A 		3.8
(-0.7)
A 		9.4
(2.9)
A 		9.5
(3)
A 		0.2
(-3)
A 		0.6
(-2.7)
A 		9
avr 4.9
(0.1) 		2.3
(-1.8) 		8.9
(3) 		3.7
(-0.8) 		0.7
(-3) 		1.4
(-2.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1298
Sequence Type Exemplar sequence
Representative Public ID F30A10.4 NCBI
Target Description F30A10.4 /REP_DB=WormBase Gene ID /WP=CE09805 /TR=Q93643 /GB=CAB03022.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060115 NCBI Caenorhabditis elegans F30A10.4 (acetylglucosaminyltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000022002 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9490908:9494663:1 11/11 None
F30A10.4 ENSEMBL cdna:known chromosome:CEL140:I:9491933:9494663:1 gene:F30A10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021990 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9491863-9494594(+) 100.0 100.0
Public Domain and Genome References
Gene Title acetylglucosaminyltransferase
Ensembl F30A10.4
Entrez Gene 185124 Entrez gene
SwissProt Q93643 EMBL-EBI
WormBase CE09805 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03022 Hypothetical protein F30A10.4 [Caenorhabditis elegans] ref|NP_492516.1| F30A10.4 [Caenorhabditis elegans] 0.0
blast CAE75383 Hypothetical protein CBG23370 [Caenorhabditis briggsae] 1.0E-162
blast CAE75382 Hypothetical protein CBG23369 [Caenorhabditis briggsae] 1.0E-161
blast CAE75383 Hypothetical protein CBG23370 [Caenorhabditis briggsae] 1.0E-145
blast CAE75382 Hypothetical protein CBG23369 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 2.1E-88
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 5.4E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492516.1 1 33-55
F30A10.4 1 33-55
GENEFINDER00000022002 2 15-37,179-201
Sequence
Target Sequence 
>C. ELEGANS:191918_AT
gaacatttgaagattggactccagctggaatgaaacttttcaaaaatgaacaaagtgtac
ctctggaaatactccacaaaaaactaaaaattcgaaaaagtttaaacgaagtaatccttt
cgaaggtatttgtcaagtctttatttgataaagtgaatctgcaaaatgtaatcaaaagat
ttgatgatagaacgctttttggggttgacgaaatgatggttatgacactttttgaaaact
atttgggattagatgggcaaatggaatctaattgtaccgtggcaaaggaagatatattaa
cacgtcaaactcattggcatcttgaacaatccgacggactatatcaagattgtaaatcca
agtggttaaggcattcaatatgtgtaattggagtcgaatttctacaagaactttcaaaaa
gtccgatggttattgcaaacaaagtgaccgccaacttcgattttggaacgataatttgcg
ttcgtgaaatgataaaaaccaataaaacaggaaataatccagattctcaatggctttcct
actttccacagtttcgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATTTGAAGATTGGACTCCAGC 208 347 863 Antisense
GTGTACCTCTGGAAATACTCCACAA 92 487 917 Antisense
GATAGAACGCTTTTTGGGGTTGACG 534 417 1048 Antisense
AATGGAATCTAATTGTACCGTGGCA 390 161 1122 Antisense
GTCAAACTCATTGGCATCTTGAACA 85 465 1166 Antisense
TCCGACGGACTATATCAAGATTGTA 386 595 1192 Antisense
AAATCCAAGTGGTTAAGGCATTCAA 573 117 1216 Antisense
AAAGTCCGATGGTTATTGCAAACAA 586 121 1280 Antisense
AAAGTGACCGCCAACTTCGATTTTG 347 121 1303 Antisense
AATAATCCAGATTCTCAATGGCTTT 631 171 1375 Antisense
TTTCCTACTTTCCACAGTTTCGTGA 77 669 1397 Antisense
Sequence Source Affymetrix Proprietary Database