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[191917_at]

Description T28F3.4 /REP_DB=WormBase Gene ID /WP=CE09680 /TR=Q93599 /GB=CAB05296.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 83      6grp_total > 48      4grp_total > 01      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 509
1 2 3 4 range
A 411.7
(-2.8)
P 		420.7
(-2.6)
P 		396.5
(-3)
P 		785.4
(3)
P 		389
B 340.2
(-3)
P 		371
(-2.6)
P 		421.6
(-1.9)
P 		804.9
(3)
P 		465
C 328.1
(-2.5)
P 		295.5
(-3)
P 		383.2
(-1.6)
P 		663.9
(3)
P 		368
avr 360
(-3) 		362.4
(-3) 		400.4
(-2.4) 		751.4
(3) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 587.9
(3)
P 		453.5
(-0.1)
P 		329.5
(-3)
P 		411
(-1.1)
P 		385.7
(-1.7)
P 		548.5
(2.1)
P 		258
B 508.8
(3)
P 		373.8
(-0.8)
P 		293
(-3)
P 		437.4
(1)
P 		417.5
(0.5)
P 		487.6
(2.4)
P 		216
C 494.7
(2.8)
P 		372.7
(-3)
P 		390.6
(-2.1)
P 		498.5
(3)
P 		433.7
(-0.1)
P 		454.2
(0.9)
P 		126
avr 530.5
(3) 		400
(-1.1) 		337.7
(-3) 		449
(0.5) 		412.3
(-0.7) 		496.8
(2) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 149.9
(3)
P 		91.3
(-3)
P 		103.7
(-1.7)
P 		115
(-0.6)
P 		59
B 108.5
(-1.7)
P 		91.6
(-3)
P 		97.7
(-2.5)
P 		171.5
(3)
P 		80
C 108.6
(-0.1)
P 		85
(-3)
P 		133.5
(3)
P 		111.9
(0.3)
P 		49
avr 122.3
(1.6) 		89.3
(-3) 		111.6
(0.1) 		132.8
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 108.4
(-0.5)
P 		161.3
(3)
P 		71.8
(-3)
P 		104.2
(-0.8)
P 		116.4
(-0)
P 		133.5
(1.1)
P 		90
B 177
(2.7)
P 		124.4
(-0.1)
P 		71.2
(-3)
P 		115.9
(-0.6)
P 		169.6
(2.3)
P 		181.8
(3)
P 		111
C 183.4
(3)
P 		113.7
(-2)
P 		99.4
(-3)
P 		100.2
(-2.9)
P 		140.4
(-0.1)
P 		152.1
(0.8)
P 		84
avr 156.3
(3) 		133.1
(1.2) 		80.8
(-3) 		106.8
(-0.9) 		142.1
(1.9) 		155.8
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191917_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10356
Sequence Type Exemplar sequence
Representative Public ID T28F3.4 NCBI
Target Description T28F3.4 /REP_DB=WormBase Gene ID /WP=CE09680 /TR=Q93599 /GB=CAB05296.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070670(11), NM_182287(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070670 NCBI Caenorhabditis elegans T28F3.4a (T28F3.4) mRNA, complete cds. 11/11 None
NM_182287 NCBI Caenorhabditis elegans T28F3.4b (T28F3.4) mRNA, complete cds. 9/11 None
SNAP00000032159 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17288292:17291143:-1 11/11 None
GENEFINDER00000032166 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17288292:17291599:-1 11/11 None
T28F3.4a ENSEMBL cdna:known chromosome:CEL140:IV:17288126:17291599:-1 gene:T28F3.4 11/11 None
T28F3.4b.2 ENSEMBL cdna:known chromosome:CEL140:IV:17288162:17291685:-1 gene:T28F3.4 9/11 None
T28F3.4b.1 ENSEMBL cdna:known chromosome:CEL140:IV:17288162:17291688:-1 gene:T28F3.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17288297-17291605(-) 100.0 100.0
Public Domain and Genome References
Ensembl T28F3.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56246 Hypothetical protein T28F3.4a [Caenorhabditis elegans] ref|NP_503071.2| T28F3.4a [Caenorhabditis elegans] 0.0
blast T25419 hypothetical protein T28F3.4 - Caenorhabditis elegans 0.0
blast CAE57420 Hypothetical protein CBG00377 [Caenorhabditis briggsae] 0.0
blast CAD56247 Hypothetical protein T28F3.4b [Caenorhabditis elegans] ref|NP_872087.1| T28F3.4b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503071.2 10 31-53,118-140,147-169,236-258,305-327,342-364,377-399,409-431,444-463,473-495
NP_872087.1 6 31-53,118-140,147-169,236-258,305-327,342-364
T28F3.4a 10 31-53,118-140,147-169,236-258,305-327,342-364,377-399,409-431,444-463,473-495
T28F3.4b.2 6 31-53,118-140,147-169,236-258,305-327,342-364
T28F3.4b.1 6 31-53,118-140,147-169,236-258,305-327,342-364
SNAP00000032159 10 71-93,98-120,127-149,174-196,243-265,280-302,315-337,347-369,382-401,411-433
GENEFINDER00000032166 10 31-53,118-140,147-169,236-258,309-331,346-368,381-403,413-435,448-467,477-499
Sequence
Target Sequence 
>C. ELEGANS:191917_AT
tgatcctaatcacctactttgtcgattgcacaaacccaaccctaggattcgtattcttct
gcatgatgtcagctatacattccaaagctcacccaatcaactttaattctaggtatggct
gcatgggaactctagtcagtggattctacacatcgcttctctccctggcacccaagtaca
cagcaacaatgtcttcgatttctgtattttgcgcaatgatgggacgattggccacacctg
ctattgttgggctcatcaagaaacagaacaccctatccgaatggcaaacattgttccttg
tatgtgcagctgcgaatattatctgtggagctgtatttttagtttttggatcaggcgagc
tccaagaatggggactcgaagacgaggcgaaggaaatgaagacgcttgctgaaaagactc
cgttggcaagcatccagaacttgccagcagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCCTAATCACCTACTTTGTCGA 321 565 1205 Antisense
AACCCTAGGATTCGTATTCTTCTGC 155 145 1242 Antisense
GTATGGCTGCATGGGAACTCTAGTC 101 457 1317 Antisense
GTCAGTGGATTCTACACATCGCTTC 285 467 1339 Antisense
GTCTTCGATTTCTGTATTTTGCGCA 168 469 1395 Antisense
ATGATGGGACGATTGGCCACACCTG 203 47 1420 Antisense
CCACACCTGCTATTGTTGGGCTCAT 278 275 1436 Antisense
ACAGAACACCCTATCCGAATGGCAA 24 109 1467 Antisense
TTGTTCCTTGTATGTGCAGCTGCGA 300 705 1495 Antisense
AAAGACTCCGTTGGCAAGCATCCAG 236 123 1617 Antisense
AAGCATCCAGAACTTGCCAGCAGAT 105 151 1632 Antisense
Sequence Source Affymetrix Proprietary Database