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[191916_at] G-protein coupled receptor

Description C06G4.5 /REP_DB=WormBase Gene ID /WP=CE27667 /TR=SW:P34311 /GB=AAA27938.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      6grp_highest_nonorm > 80      6grp_total > 03      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 309.8
(3)
P 		106.1
(-2.3)
P 		79.2
(-3)
A 		245.4
(1.3)
P 		231
B 208.7
(3)
P 		129.2
(0.2)
M 		36.9
(-3)
A 		166.2
(1.5)
P 		172
C 228.3
(3)
P 		143.5
(-0.9)
P 		99.3
(-3)
A 		166.8
(0.1)
P 		129
avr 248.9
(3) 		126.3
(-1.2) 		71.8
(-3) 		192.8
(1.1) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 220.3
(1.8)
P 		235.4
(2.4)
P 		124.7
(-1.8)
P 		251.6
(3)
P 		186.6
(0.5)
P 		94.3
(-3)
P 		157
B 206
(1.9)
P 		196.4
(1.5)
P 		121.2
(-2.1)
P 		220.5
(2.6)
P 		228.7
(3)
P 		102.3
(-3)
P 		126
C 256.2
(3)
P 		209.3
(1)
P 		118.9
(-3)
P 		200.8
(0.6)
P 		158.7
(-1.3)
P 		126.5
(-2.7)
P 		137
avr 227.5
(3) 		213.7
(2.3) 		121.6
(-2.3) 		224.3
(2.8) 		191.3
(1.2) 		107.7
(-3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 112.8
(3)
P 		23
(-2.9)
P 		20.7
(-3)
A 		35.9
(-2)
P 		92
B 66.6
(3)
P 		31.9
(-0.6)
M 		8.6
(-3)
A 		35.4
(-0.2)
P 		58
C 75.6
(3)
P 		41.3
(-1.3)
P 		34.6
(-2.2)
A 		28.1
(-3)
P 		48
avr 85
(3) 		32.1
(-2) 		21.3
(-3) 		33.1
(-1.9) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 40.6
(-1.3)
P 		83.7
(3)
P 		27.2
(-2.6)
P 		63.8
(1)
P 		56.3
(0.3)
P 		23
(-3)
P 		61
B 71.7
(1)
P 		65.4
(0.4)
P 		29.4
(-3)
P 		58.4
(-0.3)
P 		92.9
(3)
P 		38.2
(-2.2)
P 		64
C 95
(3)
P 		63.9
(0.1)
P 		30.3
(-3)
P 		40.4
(-2.1)
P 		51.4
(-1)
P 		42.4
(-1.9)
P 		65
avr 69.1
(2.7) 		71
(3) 		29
(-3) 		54.2
(0.6) 		66.9
(2.4) 		34.5
(-2.2) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7823
Sequence Type Exemplar sequence
Representative Public ID C06G4.5 NCBI
Target Description C06G4.5 /REP_DB=WormBase Gene ID /WP=CE27667 /TR=SW:P34311 /GB=AAA27938.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066342 NCBI Caenorhabditis elegans C06G4.5 (C06G4.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000040335 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7990760:7996359:-1 10/11 None
C06G4.5 ENSEMBL cdna:known chromosome:CEL140:III:7990713:7996362:-1 gene:C06G4.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040331 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7991712-7996357(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl C06G4.5
Entrez Gene 176124 Entrez gene
WormBase CE38997 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498743 C06G4.5 [Caenorhabditis elegans] sp|P34311|YKR5_CAEEL Probable G-protein coupled receptor C06G4.5 0.0
blast AAA27938 Hypothetical protein C06G4.5 [Caenorhabditis elegans] 0.0
blast CAE75040 Hypothetical protein CBG22950 [Caenorhabditis briggsae] 1.0E-180
blast CAE75040 Hypothetical protein CBG22950 [Caenorhabditis briggsae] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.3E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498743.1 5 52-74,94-116,202-224,244-266,288-310
C06G4.5 5 52-74,94-116,202-224,244-266,288-310
GENEFINDER00000040335 5 52-74,94-116,219-241,262-284,306-328
Sequence
Target Sequence 
>C. ELEGANS:191916_AT
gattctcggtttctggatgtttggcaaaataccatgtaaacttcatgcagtattcgagaa
tttcggtaaaatcctgagtgctctcattctgacggcaatgagttttgatcggtacgccgg
agtttgccatccacagcgaaaacggttgagatcaaggaattttgcaattactatactttt
agcacccggaatgctgacaagaatgaaaattgagaaatgcacagtggatatcgactcaca
aatgttcacagctttcacgatttatcagttcattctctgttattgtactccattggttct
catcgcctttttctatacgaaacttctcagcaaactccgtgaacacacaaggacgtttaa
gagctctcaaatcccatttttgcacatttcgttgtacactctagcagttgcatgtttcta
ttttttatgctggaccccattctggatggctacattattcgcagtttatctcgaaaactc
agcaaattcgagtagtgttccaccagtttttgtatatattatgtattttattcatgctct
accgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTCGGTTTCTGGATGTTTGGC 655 431 366 Antisense
TGAGTGCTCTCATTCTGACGGCAAT 11 569 440 Antisense
TGATCGGTACGCCGGAGTTTGCCAT 551 565 471 Antisense
GTTCATTCTCTGTTATTGTACTCCA 214 445 633 Antisense
ATTGTACTCCATTGGTTCTCATCGC 296 5 647 Antisense
TTCTCATCGCCTTTTTCTATACGAA 81 693 662 Antisense
ACTTCTCAGCAAACTCCGTGAACAC 385 101 687 Antisense
GAGCTCTCAAATCCCATTTTTGCAC 458 387 726 Antisense
GCACATTTCGTTGTACACTCTAGCA 684 315 747 Antisense
TGGACCCCATTCTGGATGGCTACAT 172 545 796 Antisense
TATTTTATTCATGCTCTACCGTTCA 337 661 889 Antisense
Sequence Source Affymetrix Proprietary Database