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[191915_s_at] 60S ribosomal protein L15

Description K11H12.2 /REP_DB=WormBase Gene ID /WP=CE12148 /TR=SW:P91374 /GB=AAC24397.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=60S ribosomal protein L15
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 42      4grp_total > 17      6grp_highest_sub > 03      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18486
1 2 3 4 range
A 27867
(-3)
P 		34214.1
(-0.8)
P 		34184.1
(-0.8)
P 		45384.6
(3)
P 		17518
B 30568.2
(-3)
P 		31530.1
(-2.2)
P 		35320.8
(1)
P 		37725.7
(3)
P 		7158
C 26899
(-3)
P 		30578.4
(-1.5)
P 		28699.6
(-2.2)
P 		41274.1
(3)
P 		14375
avr 28444.7
(-3) 		32107.5
(-1.3) 		32734.8
(-1) 		41461.5
(3) 		13017

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10055
1 2 3 4 5 6 range
A 24984.8
(0.4)
P 		23788.9
(-0.4)
P 		28579.4
(3)
P 		25248.4
(0.6)
P 		20240.4
(-3)
P 		21793
(-1.9)
P 		8339
B 21001.4
(-1.5)
P 		23753.1
(0.2)
P 		28218.1
(3)
P 		21956.3
(-0.9)
P 		20767.6
(-1.6)
P 		18524.2
(-3)
P 		9694
C 23517.3
(0.8)
P 		24055.9
(1.4)
P 		25700.8
(3)
P 		25675.8
(3)
P 		25378.5
(2.7)
P 		19701
(-3)
P 		6000
avr 23167.8
(-0.5) 		23866
(0.1) 		27499.4
(3) 		24293.5
(0.4) 		22128.8
(-1.3) 		20006.1
(-3) 		7493
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3503
1 2 3 4 range
A 10146.4
(3)
P 		7427
(-1.7)
P 		8936.4
(0.9)
P 		6643.4
(-3)
P 		3503
B 9748
(3)
P 		7787.2
(-3)
P 		8184.6
(-1.8)
P 		8039.4
(-2.2)
P 		1961
C 8904.3
(0.8)
P 		8791.5
(0.6)
P 		10002.7
(3)
P 		6959.5
(-3)
P 		3043
avr 9599.6
(3) 		8001.9
(-1) 		9041.2
(1.6) 		7214.1
(-3) 		2386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4111
1 2 3 4 5 6 range
A 4605.8
(-3)
P 		8460.5
(3)
P 		6224
(-0.5)
P 		6403.6
(-0.2)
P 		6107.7
(-0.7)
P 		5305.9
(-1.9)
P 		3855
B 7307.5
(0.4)
P 		7906.4
(1.8)
P 		6852.2
(-0.6)
P 		5815.5
(-3)
P 		8437.6
(3)
P 		6907.6
(-0.5)
P 		2622
C 8716.9
(3)
P 		7340.2
(0.7)
P 		6541.3
(-0.7)
P 		5163.4
(-3)
P 		8212.1
(2.1)
P 		6595.1
(-0.6)
P 		3554
avr 6876.7
(0.1) 		7902.4
(3) 		6539.2
(-0.9) 		5794.2
(-3) 		7585.8
(2.1) 		6269.5
(-1.6) 		2108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191915_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11116
Sequence Type Exemplar sequence
Representative Public ID K11H12.2 NCBI
Target Description K11H12.2 /REP_DB=WormBase Gene ID /WP=CE12148 /TR=SW:P91374 /GB=AAC24397.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=60S ribosomal protein L15
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067563 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-15) (rpl-15) mRNA, complete cds. 11/11 A 
SNAP00000015761 ENSEMBL cdna:SNAP chromosome:CEL140:IV:653538:654571:-1 11/11 None
GENEFINDER00000015772 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:653538:654571:-1 11/11 None
K11H12.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:653438:654582:-1 gene:K11H12.2 11/11 A 
K11H12.2.3 ENSEMBL cdna:known chromosome:CEL140:IV:653438:654750:-1 gene:K11H12.2 11/11 A 
K11H12.2.4 ENSEMBL cdna:known chromosome:CEL140:IV:653438:654696:-1 gene:K11H12.2 11/11 A 
K11H12.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:653438:654576:-1 gene:K11H12.2 11/11 A 
K11H12.2.5 ENSEMBL cdna:known chromosome:CEL140:IV:653475:654578:-1 gene:K11H12.2 11/11 None
K11H12.2.6 ENSEMBL cdna:known chromosome:CEL140:IV:653475:654749:-1 gene:K11H12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:653543-654577(-) 100.0 100.0
Public Domain and Genome References
Gene Title 60S ribosomal protein L15
Gene Symbol rpl-15
Ensembl K11H12.2
Entrez Gene 176891 Entrez gene
SwissProt P91374 EMBL-EBI
WormBase CE12148 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16926_AT 60S ribosomal protein L15 (RPL15B) at
ATH1-121501:245355_AT 60S ribosomal protein L15 (RPL15B) at
CANINE:1583586_X_AT similar to ribosomal protein L15 cfa
CANINE:1584926_X_AT similar to ribosomal protein L15 cfa
CANINE:1599415_AT similar to ribosomal protein L15 cfa
CANINE:1588280_AT similar to ribosomal protein L15 cfa
CANINE:1585065_X_AT similar to ribosomal protein L15 cfa
CANINE:1585048_X_AT similar to ribosomal protein L15 cfa
CANINE:1583368_X_AT similar to ribosomal protein L15 cfa
CANINE_2:CFA.4501.1.A1_S_AT similar to ribosomal protein L15 cfa
CHICKEN:GGA.4855.1.S1_AT ribosomal protein L15 gga
HG-U95AV2:32432_F_AT ribosomal protein L15 hs
HG-U95AV2:32433_AT ribosomal protein L15 hs
HG-U133_PLUS_2:221475_S_AT ribosomal protein L15 hs
HG-U133A_2:221475_S_AT ribosomal protein L15 hs
HG-U133A:221475_S_AT ribosomal protein L15 hs
HG-U133A:221476_S_AT ribosomal protein L15 hs
HG-U133_PLUS_2:221476_S_AT ribosomal protein L15 hs
HG-U133A_2:221476_S_AT ribosomal protein L15 hs
HG-FOCUS:221476_S_AT ribosomal protein L15 hs
HG-U133_PLUS_2:217266_AT ribosomal protein L15 hs
HG-U133A_2:217266_AT ribosomal protein L15 hs
HG-U133A:217266_AT ribosomal protein L15 hs
HU35KSUBC:RC_D51284_F_AT ribosomal protein L15 hs
HU35KSUBC:RC_C14094_F_AT ribosomal protein L15 hs
HU35KSUBD:RC_AA600026_AT ribosomal protein L15 hs
U133_X3P:G12006349_3P_A_AT ribosomal protein L15 hs
U133_X3P:HS.74267.0.S1_3P_S_AT ribosomal protein L15 hs
U133_X3P:HS.247851.0.S1_3P_X_AT ribosomal protein L15 hs
U133_X3P:HS.247851.0.S1_3P_AT ribosomal protein L15 hs
HG-U95B:48807_AT ribosomal protein L15 hs
HG-U95C:63705_F_AT ribosomal protein L15 hs
HG-U95C:63906_F_AT ribosomal protein L15 hs
HG-U95E:87923_AT ribosomal protein L15 hs
U133_X3P:HS2.384567.1.S1_3P_AT Ribosomal protein L15 hs
U133_X3P:HS.134772.0.A1_3P_AT Ribosomal protein L15 hs
HG-U133_PLUS_2:1563348_AT Ribosomal protein L15 hs
HG-U133_PLUS_2:240806_AT Ribosomal protein L15 hs
HG-U133B:240806_AT Ribosomal protein L15 hs
HG-U95D:78690_AT Ribosomal protein L15 hs
HG-U95D:90906_AT Ribosomal protein L15 hs
MU11KSUBB:W13172_S_AT ribosomal protein L15 mm
MOE430A:1434328_AT ribosomal protein L15 mm
MOUSE430A_2:1434328_AT ribosomal protein L15 mm
MOUSE430_2:1434328_AT ribosomal protein L15 mm
MOE430A:1449255_A_AT ribosomal protein L15 mm
MOUSE430A_2:1449255_A_AT ribosomal protein L15 mm
MOUSE430_2:1449255_A_AT ribosomal protein L15 mm
MU19KSUBC:TC39717_AT Ribosomal protein L15 (Rpl15), mRNA mm
RG-U34A:X78167_AT ribosomal protein L15 rn
RAE230A:1398315_AT ribosomal protein L15 rn
RAT230_2:1398315_AT ribosomal protein L15 rn
YEAST_2:1774255_AT Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Ap and has similarity to rat L15 ribosomal protein; binds to 5.8 S rRNA Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_499964 Ribosomal Protein, Large subunit family member (rpl-15) [Caenorhabditis elegans] gb|AAC24397.1| Ribosomal protein, large subunit protein 15 [Caenorhabditis elegans] sp|P91374|RL15_CAEEL 60S ribosomal protein L15 1.0E-107
blast CAE73732 Hypothetical protein CBG21258 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR000439 EMBL-EBI Ribosomal protein L15e 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191915_S_AT
ccgtattcgtacctggcactacagacagttgagcgccgtccaccgtgtcccacgcccaac
cagaccagagaaggctcgccgtctcggataccgtgccaagcaaggattcgttgtctaccg
cgtccgtgtccgcagaggaaacagaaagcgtccagtctgcaagggacaaacctacggaaa
gccaaagacccatggagttaacgagctcaagaacgccaagtctaagcaagccgttgctga
gggccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTATTCGTACCTGGCACTACAGA 545 263 81 Antisense
GCACTACAGACAGTTGAGCGCCGTC 495 315 96 Antisense
AACCAGACCAGAGAAGGCTCGCCGT 49 149 138 Antisense
CGTCTCGGATACCGTGCCAAGCAAG 645 245 160 Antisense
AAGCAAGGATTCGTTGTCTACCGCG 34 153 178 Antisense
CGTCCGTGTCCGCAGAGGAAACAGA 609 243 201 Antisense
GAAAGCGTCCAGTCTGCAAGGGACA 230 359 224 Antisense
ACCTACGGAAAGCCAAAGACCCATG 172 87 250 Antisense
GACCCATGGAGTTAACGAGCTCAAG 590 381 267 Antisense
AAGAACGCCAAGTCTAAGCAAGCCG 266 153 289 Antisense
TAAGCAAGCCGTTGCTGAGGGCCGC 567 629 303 Antisense
Sequence Source Affymetrix Proprietary Database