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[191911_s_at]

Description F32B6.8 /REP_DB=WormBase Gene ID /WP=CE09863 /TR=O45434 /GB=CAB03042.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast ORF YOR070C protein like
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 76      6grp_total > 04      4grp_total > 48      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 677
1 2 3 4 range
A 741.4
(-3)
P 		968.5
(-0.4)
P 		1265.3
(3)
P 		846.9
(-1.8)
P 		524
B 696.8
(-3)
P 		914.2
(-0.5)
P 		1224.6
(3)
P 		789.3
(-1.9)
P 		528
C 588.8
(-3)
P 		990.9
(1)
P 		1193.2
(3)
P 		765.1
(-1.2)
P 		604
avr 675.7
(-3) 		957.9
(0.1) 		1227.7
(3) 		800.4
(-1.6) 		552

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 630
1 2 3 4 5 6 range
A 1042.9
(0.6)
P 		1141.3
(3)
P 		890.9
(-3)
P 		1061.5
(1.1)
P 		1110.8
(2.3)
P 		1000.9
(-0.4)
P 		250
B 1333.7
(3)
P 		1059.5
(0.4)
P 		703.3
(-3)
P 		1136.7
(1.1)
P 		1099.4
(0.8)
P 		837.5
(-1.7)
P 		630
C 1083.5
(3)
P 		1053.1
(2.5)
P 		1057
(2.6)
P 		901.3
(-0.1)
P 		1003.4
(1.6)
P 		728.2
(-3)
P 		355
avr 1153.4
(3) 		1084.6
(1.6) 		883.7
(-2.4) 		1033.2
(0.6) 		1071.2
(1.3) 		855.5
(-3) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 292
1 2 3 4 range
A 269.9
(1.2)
P 		210.2
(-0.5)
P 		330.8
(3)
P 		124
(-3)
P 		207
B 222.2
(-0.2)
P 		225.8
(-0)
P 		283.8
(3)
P 		168.2
(-3)
P 		116
C 194.9
(-1.6)
P 		284.9
(0.3)
P 		415.9
(3)
P 		129
(-3)
P 		287
avr 229
(-0.4) 		240.3
(-0) 		343.5
(3) 		140.4
(-3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 192.2
(-3)
P 		405.9
(3)
P 		194
(-2.9)
P 		269.2
(-0.8)
P 		335.2
(1)
P 		243.7
(-1.6)
P 		214
B 464.1
(3)
P 		352.7
(0.7)
P 		170.8
(-3)
P 		301.1
(-0.3)
P 		446.7
(2.6)
P 		312.3
(-0.1)
P 		293
C 401.6
(3)
P 		321.3
(0.8)
P 		269
(-0.6)
P 		181.2
(-3)
P 		324.7
(0.9)
P 		243.8
(-1.3)
P 		220
avr 352.6
(2.4) 		360
(2.7) 		211.3
(-3) 		250.5
(-1.5) 		368.9
(3) 		266.6
(-0.9) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191911_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8779
Sequence Type Exemplar sequence
Representative Public ID F32B6.8 NCBI
Target Description F32B6.8 /REP_DB=WormBase Gene ID /WP=CE09863 /TR=O45434 /GB=CAB03042.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast ORF YOR070C protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027993(11), NM_001027994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027993 NCBI Caenorhabditis elegans F32B6.8a (F32B6.8) mRNA, complete cds. 11/11 None
NM_001027994 NCBI Caenorhabditis elegans F32B6.8b (F32B6.8) mRNA, complete cds. 11/11 None
SNAP00000041536 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9899549:9902121:1 11/11 None
GENEFINDER00000041545 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9898984:9902121:1 11/11 None
F32B6.8a.2 ENSEMBL cdna:known chromosome:CEL140:IV:9898983:9902477:1 gene:F32B6.8 11/11 None
F32B6.8a.1 ENSEMBL cdna:known chromosome:CEL140:IV:9898984:9902477:1 gene:F32B6.8 11/11 None
F32B6.8b.2 ENSEMBL cdna:known chromosome:CEL140:IV:9899298:9902121:1 gene:F32B6.8 11/11 None
F32B6.8b.1 ENSEMBL cdna:known chromosome:CEL140:IV:9899536:9902121:1 gene:F32B6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9899554-9902127(+) 100.0 100.0
Public Domain and Genome References
Ensembl F32B6.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE46669 Hypothetical protein F32B6.8a [Caenorhabditis elegans] ref|NP_001023164.1| F32B6.8a [Caenorhabditis elegans] 0.0
blast CAB03042 Hypothetical protein F32B6.8b [Caenorhabditis elegans] ref|NP_001023165.1| F32B6.8b [Caenorhabditis elegans] 0.0
blast CAE59970 Hypothetical protein CBG03461 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:191911_S_AT
gttctttgtcgtttttctctcagaattcattccacaagatgtcgaagtcggttcttttga
cgtttctcaacttcctttggagcaatgccagctcatcgaagcagattcattttggtgtgt
ttcgtcgctactcgattctatccaggataactacacatttgcacaacccggaattcaacg
aaaggtgctccaacttcgccatttgatgagtcgagttgatcggcctctacacaagcactt
ggaatccaatgggattgaatatttgcaattcgcattccgttggatgaataatcttttgat
gcgagaaattccgctcagagcgactatcaggctatgggacacttatctgagtgagcccga
cggtttcatgcagtttcataactatgtatgcgctgcgttcttacggacgtggtctaagca
attgcaagccgaaaaagatttccagggagtaatgattcttctgcaaaacttgccaactca
atcatggggtgatcgtgagatctgcgaactaactgcagatgccttctctcttcaatccgt
gtttgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTTGTCGTTTTTCTCTCAGAA 505 443 912 Antisense
ACGTTTCTCAACTTCCTTTGGAGCA 393 93 971 Antisense
TCATTTTGGTGTGTTTCGTCGCTAC 51 619 1018 Antisense
TCGCTACTCGATTCTATCCAGGATA 420 599 1036 Antisense
GATAACTACACATTTGCACAACCCG 90 423 1057 Antisense
TGCTCCAACTTCGCCATTTGATGAG 152 583 1097 Antisense
TGAGTCGAGTTGATCGGCCTCTACA 507 565 1118 Antisense
GCGACTATCAGGCTATGGGACACTT 533 289 1231 Antisense
TGTATGCGCTGCGTTCTTACGGACG 494 557 1296 Antisense
GAACTAACTGCAGATGCCTTCTCTC 508 349 1417 Antisense
TTCTCTCTTCAATCCGTGTTTGACG 223 693 1435 Antisense
Sequence Source Affymetrix Proprietary Database