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[191909_at] protein-tyrosine phosphatase

Description C17H12.5 /REP_DB=WormBase Gene ID /WP=CE16866 /TR=O45079 /GB=AAC02584.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 95      4grp_total > 44      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 42.4
(-0)
A 		32.6
(-1.1)
A 		15.8
(-3)
A 		69.3
(3)
A 		54
B 77.6
(0.7)
A 		113.1
(3)
A 		20.8
(-3)
A 		54.2
(-0.8)
A 		92
C 48
(-0.8)
A 		102.5
(3)
A 		62.6
(0.2)
A 		16.6
(-3)
A 		86
avr 56
(-0.2) 		82.7
(3) 		33.1
(-3) 		46.7
(-1.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 66.6
(0.2)
A 		41.9
(-1.4)
A 		18.1
(-3)
A 		103.3
(2.6)
A 		109.1
(3)
M 		101.6
(2.5)
P 		91
B 54.1
(-1.9)
A 		74.3
(-0.9)
A 		34.2
(-3)
A 		92
(0.1)
A 		73.2
(-0.9)
A 		146.7
(3)
P 		113
C 61.3
(-1.7)
A 		27.9
(-3)
A 		56.1
(-1.9)
A 		58.8
(-1.8)
A 		177.7
(3)
A 		116.3
(0.5)
A 		150
avr 60.7
(-1.3) 		48
(-2.2) 		36.1
(-3) 		84.7
(0.4) 		120
(2.9) 		121.5
(3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 15.4
(3)
A 		7.1
(-1.4)
A 		4.1
(-3)
A 		10.1
(0.2)
A 		11
B 24.8
(2.2)
A 		27.9
(3)
A 		4.8
(-3)
A 		11.5
(-1.3)
A 		23
C 15.9
(-0.1)
A 		29.5
(3)
A 		21.8
(1.3)
A 		2.8
(-3)
A 		27
avr 18.7
(1.7) 		21.5
(3) 		10.2
(-2.1) 		8.1
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 12.3
(-1.3)
A 		14.9
(-0.7)
A 		3.9
(-3)
A 		26.2
(1.6)
A 		32.9
(3)
M 		24.7
(1.3)
P 		29
B 18.8
(-1.6)
A 		24.7
(-0.9)
A 		8.3
(-3)
A 		24.4
(-0.9)
A 		29.8
(-0.2)
A 		54.7
(3)
P 		46
C 22.7
(-1.3)
A 		8.5
(-3)
A 		14.3
(-2.3)
A 		11.8
(-2.6)
A 		57.5
(3)
A 		38.9
(0.7)
A 		49
avr 17.9
(-1.3) 		16
(-1.6) 		8.8
(-3) 		20.8
(-0.7) 		40.1
(3) 		39.4
(2.9) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191909_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8762
Sequence Type Exemplar sequence
Representative Public ID C17H12.5 NCBI
Target Description C17H12.5 /REP_DB=WormBase Gene ID /WP=CE16866 /TR=O45079 /GB=AAC02584.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068646(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068646 NCBI Caenorhabditis elegans C17H12.5 (C17H12.5) mRNA, complete cds. 11/11 None
SNAP00000015113 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6815923:6820400:-1 11/11 None
GENEFINDER00000015118 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6815923:6817455:-1 11/11 None
C17H12.5 ENSEMBL cdna:known chromosome:CEL140:IV:6815923:6817561:-1 gene:C17H12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6815928-6817567(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl C17H12.5
Entrez Gene 182754 Entrez gene
SwissProt O45079 EMBL-EBI
WormBase CE16866 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC02584 Hypothetical protein C17H12.5 [Caenorhabditis elegans] ref|NP_501047.1| C17H12.5 [Caenorhabditis elegans] 0.0
blast CAE18038 Hypothetical protein Y62F5A.10 [Caenorhabditis elegans] ref|NP_001022486.1| Y62F5A.10 [Caenorhabditis elegans] 1.0E-156
blast CAE18038 Hypothetical protein Y62F5A.10 [Caenorhabditis elegans] ref|NP_001022486.1| Y62F5A.10 [Caenorhabditis elegans] 1.0E-155
blast CAE67189 Hypothetical protein CBG12625 [Caenorhabditis briggsae] 1.0E-149
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.0E-40
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:191909_AT
gaatgatttcttcccaacaactatgggtgcatatgtgtactatggagcgatgttcgtcaa
cattcgcaaggttgaaaaaatggacgaagagcgtactcgttatacgattgaagttcttcc
gaatggtttctccaactctgtgatgatgaacgtctacgtccacactggttgggaagcgtc
tggagttccagttcgctatgccaacactactcgttctgtagttgacgtaatgaactttgt
gaagacctctagtggcacagaaaagatgctggtcgtgtccaagaatggttgcggtcgtgc
tggattcttcctttctttgggcgccgcattttgctgcttgaacgataactcggaaccaag
gatcggagaaattgtaaaggcgattcggagccagagaccaaatgcggttgatagtatcaa
gcaatacgcatcaatctatctctgtttcgtctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGATTTCTTCCCAACAACTATG 392 331 783 Antisense
GGAGCGATGTTCGTCAACATTCGCA 54 523 826 Antisense
GAAGTTCTTCCGAATGGTTTCTCCA 527 335 892 Antisense
GGTTTCTCCAACTCTGTGATGATGA 38 507 907 Antisense
CGTCTACGTCCACACTGGTTGGGAA 674 245 933 Antisense
GTCTGGAGTTCCAGTTCGCTATGCC 34 471 960 Antisense
TATGCCAACACTACTCGTTCTGTAG 549 657 979 Antisense
AAGAATGGTTGCGGTCGTGCTGGAT 207 153 1063 Antisense
CGCCGCATTTTGCTGCTTGAACGAT 460 255 1104 Antisense
GCGATTCGGAGCCAGAGACCAAATG 15 291 1162 Antisense
ATCAATCTATCTCTGTTTCGTCTAT 163 27 1212 Antisense
Sequence Source Affymetrix Proprietary Database