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[191908_s_at] protein-tyrosine phosphatase

Description F20H11.4 /REP_DB=WormBase Gene ID /WP=CE20702 /TR=O01736 /GB=AAD34661.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 78      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 19.4
(-2.5)
A 		11.9
(-2.9)
A 		9.6
(-3)
A 		123.2
(3)
P 		114
B 39.9
(3)
A 		10.2
(-3)
A 		26.1
(0.2)
A 		14.8
(-2.1)
A 		30
C 7
(-3)
A 		8.1
(-2.8)
A 		11.9
(-2.2)
A 		44.6
(3)
A 		38
avr 22.1
(-1.6) 		10.1
(-3) 		15.9
(-2.3) 		60.9
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 31.6
(-1.7)
A 		8
(-3)
A 		7.6
(-3)
A 		30.2
(-1.7)
A 		41.7
(-1.1)
A 		115.9
(3)
P 		108
B 40.3
(-1.3)
A 		5.7
(-3)
A 		24.2
(-2.1)
A 		62.6
(-0.1)
A 		87.1
(1.1)
P 		125.4
(3)
P 		120
C 34.1
(-1.8)
A 		55.7
(-1)
A 		3.7
(-3)
A 		9.9
(-2.8)
A 		39.6
(-1.6)
A 		156.2
(3)
P 		153
avr 35.3
(-1.8) 		23.1
(-2.4) 		11.8
(-3) 		34.2
(-1.9) 		56.1
(-0.8) 		132.5
(3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.1
(-1.2)
A 		2.6
(-3)
A 		2.5
(-3)
A 		18
(3)
P 		16
B 12.7
(3)
A 		2.5
(-3)
A 		6.1
(-0.9)
A 		3.2
(-2.6)
A 		10
C 2.3
(-3)
A 		2.3
(-3)
A 		4.2
(-0.8)
A 		7.5
(3)
A 		5
avr 7.4
(1.1) 		2.5
(-3) 		4.3
(-1.5) 		9.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 5.8
(-2.1)
A 		2.9
(-2.7)
A 		1.7
(-3)
A 		7.7
(-1.6)
A 		12.6
(-0.5)
A 		28.2
(3)
P 		27
B 14
(-1.4)
A 		1.9
(-3)
A 		5.9
(-2.5)
A 		16.6
(-1)
A 		35.4
(1.5)
P 		46.8
(3)
P 		45
C 12.6
(-1.6)
A 		17
(-1.1)
A 		0.9
(-3)
A 		2
(-2.9)
A 		12.8
(-1.6)
A 		52.3
(3)
P 		51
avr 10.8
(-1.8) 		7.3
(-2.3) 		2.8
(-3) 		8.8
(-2.1) 		20.3
(-0.3) 		42.4
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191908_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7725
Sequence Type Exemplar sequence
Representative Public ID F20H11.4 NCBI
Target Description F20H11.4 /REP_DB=WormBase Gene ID /WP=CE20702 /TR=O01736 /GB=AAD34661.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066057 NCBI Caenorhabditis elegans F20H11.4 (F20H11.4) mRNA, complete cds. 11/11 None
F20H11.4 ENSEMBL cdna:known chromosome:CEL140:III:6608558:6610266:1 gene:F20H11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6608597-6610265(+) 87.99 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl F20H11.4
Entrez Gene 175937 Entrez gene
SwissProt O01736 EMBL-EBI
WormBase CE20702 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD34661 Hypothetical protein F20H11.4 [Caenorhabditis elegans] ref|NP_498458.1| F20H11.4 [Caenorhabditis elegans] 0.0
blast B88486 protein F20H11.4 [imported] - Caenorhabditis elegans 1.0E-156
blast CAE74735 Hypothetical protein CBG22554 [Caenorhabditis briggsae] 4.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.9E-90
Sequence
Target Sequence 
>C. ELEGANS:191908_S_AT
gaatgtccatctctggttgtgaagcattatcattttctcaaatggcgagatcacactgct
ccaatgacatccatatcagtattaaaattgttgaaagcgttgagagatccaaaaagacca
ggtccacctgtaatccattgttcagctggaattggtagaactgccacgttgatcggtgtt
gattacggtaaccaaaggatcggagaagttggcgagatgaacgttcttgatattgttcgt
gagatgcgtcaaatgagggataaagccgttcagagtcatcatcagtttatattcatgctt
atgtgtattgcagatcgaatggttttggatggtgtcccacaaaacgataatatgctggac
ctggcagatttctacacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTCCATCTCTGGTTGTGAAGC 707 331 823 Antisense
GTTGTGAAGCATTATCATTTTCTCA 445 437 838 Antisense
AAATGGCGAGATCACACTGCTCCAA 388 121 862 Antisense
TGCTCCAATGACATCCATATCAGTA 131 583 879 Antisense
CCAGGTCCACCTGTAATCCATTGTT 159 271 940 Antisense
GAACTGCCACGTTGATCGGTGTTGA 394 349 980 Antisense
GAAGTTGGCGAGATGAACGTTCTTG 578 335 1027 Antisense
AACGTTCTTGATATTGTTCGTGAGA 554 143 1042 Antisense
AAGCCGTTCAGAGTCATCATCAGTT 100 149 1085 Antisense
GAATGGTTTTGGATGGTGTCCCACA 633 313 1139 Antisense
TGGACCTGGCAGATTTCTACACGGA 71 549 1178 Antisense
Sequence Source Affymetrix Proprietary Database