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[191904_s_at] Sugar (and other) transporters

Description K09E9.1 /REP_DB=WormBase Gene ID /WP=CE26818 /TR=Q93877 /GB=CAB01888.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 71      6grp_total > 71      4grp_total > 54      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 372.7
(3)
P 		232.8
(-1)
P 		222.5
(-1.3)
P 		164.3
(-3)
P 		208
B 280.1
(1.1)
P 		321.2
(3)
P 		190.2
(-3)
P 		203.6
(-2.4)
P 		131
C 408.3
(3)
P 		216.1
(-2.3)
P 		265.1
(-0.9)
P 		190.7
(-3)
P 		218
avr 353.7
(3) 		256.7
(-0.5) 		225.9
(-1.6) 		186.2
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 505
1 2 3 4 5 6 range
A 332.3
(0.3)
P 		350.5
(0.6)
P 		393.9
(1.6)
P 		459.2
(3)
P 		343.6
(0.5)
P 		181.7
(-3)
P 		278
B 363.6
(0)
P 		392.6
(0.5)
P 		300.4
(-1)
P 		542.5
(3)
P 		330.7
(-0.5)
P 		183.5
(-3)
P 		359
C 320.4
(-1.3)
P 		424.4
(-0)
P 		332.9
(-1.1)
P 		679.2
(3)
P 		304.2
(-1.5)
P 		174.4
(-3)
P 		505
avr 338.8
(-0.5) 		389.2
(0.3) 		342.4
(-0.4) 		560.3
(3) 		326.2
(-0.7) 		179.9
(-3) 		380
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 135.7
(3)
P 		50.5
(-1.6)
P 		58.2
(-1.2)
P 		24.1
(-3)
P 		112
B 89.3
(3)
P 		79.3
(1.7)
P 		44.1
(-2.9)
P 		43.4
(-3)
P 		46
C 135.2
(3)
P 		62.1
(-1.3)
P 		92.4
(0.5)
P 		32.2
(-3)
P 		103
avr 120.1
(3) 		64
(-0.9) 		64.9
(-0.8) 		33.2
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 61.3
(-1.7)
P 		124.7
(3)
P 		85.8
(0.1)
P 		116.5
(2.4)
P 		103.7
(1.4)
P 		44.2
(-3)
P 		81
B 126.5
(1.6)
P 		130.7
(2)
P 		73
(-2.6)
P 		143.7
(3)
P 		134.4
(2.3)
P 		68.4
(-3)
P 		75
C 118.8
(1.6)
P 		129.5
(2.5)
P 		84.7
(-1)
P 		136.6
(3)
P 		98.4
(0.1)
P 		58.4
(-3)
P 		78
avr 102.2
(0.6) 		128.3
(2.7) 		81.2
(-1.1) 		132.3
(3) 		112.2
(1.4) 		57
(-3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191904_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17720
Sequence Type Exemplar sequence
Representative Public ID K09E9.1 NCBI
Target Description K09E9.1 /REP_DB=WormBase Gene ID /WP=CE26818 /TR=Q93877 /GB=CAB01888.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078175 NCBI Caenorhabditis elegans K09E9.1 (K09E9.1) mRNA, complete cds. 11/11 None
SNAP00000003231 ENSEMBL cdna:SNAP chromosome:CEL140:X:15622254:15626199:1 11/11 None
GENEFINDER00000003236 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15622254:15626199:1 11/11 None
K09E9.1.2 ENSEMBL cdna:known chromosome:CEL140:X:15620415:15626538:1 gene:K09E9.1 11/11 None
K09E9.1.1 ENSEMBL cdna:known chromosome:CEL140:X:15620418:15626538:1 gene:K09E9.1 11/11 None
K09E9.1.4 ENSEMBL cdna:known chromosome:CEL140:X:15622225:15626531:1 gene:K09E9.1 11/11 None
K09E9.1.3 ENSEMBL cdna:known chromosome:CEL140:X:15622253:15626538:1 gene:K09E9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15621958-15626199(+) 100.0 100.0
Public Domain and Genome References
Gene Title Sugar (and other) transporters
Ensembl K09E9.1
Entrez Gene 181654 Entrez gene
SwissProt Q93877 EMBL-EBI
WormBase CE31561 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01888 Hypothetical protein K09E9.1 [Caenorhabditis elegans] ref|NP_510576.2| K09E9.1 [Caenorhabditis elegans] 0.0
blast CAE63339 Hypothetical protein CBG07740 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 3.6E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510576.2 11 48-70,115-137,144-166,171-193,206-225,229-251,320-342,352-374,381-403,408-427,472-494
K09E9.1.2 11 48-70,115-137,144-166,171-193,206-225,229-251,320-342,352-374,381-403,408-427,472-494
K09E9.1.1 11 48-70,115-137,144-166,171-193,206-225,229-251,320-342,352-374,381-403,408-427,472-494
K09E9.1.4 11 48-70,115-137,144-166,171-193,206-225,229-251,320-342,352-374,381-403,408-427,472-494
K09E9.1.3 11 48-70,115-137,144-166,171-193,206-225,229-251,320-342,352-374,381-403,408-427,472-494
SNAP00000003231 11 48-70,115-137,144-166,171-193,205-227,232-254,298-320,330-352,359-378,388-410,430-449
GENEFINDER00000003236 11 48-70,115-137,144-166,171-193,206-225,229-251,320-342,352-374,381-403,408-427,472-494
Sequence
Target Sequence 
>C. ELEGANS:191904_S_AT
attgggtttcagtgctccaacgcatactgatgagaagaaaacttggaaaacattgtttaa
gtccacaagattcctaaaaccaacagctgtcatgtgctactcatttatggcttcttccat
tgtttcatttggcttttacttctccattgatgttctcccaggcaaccgatactacaatat
gactattatgggaattttgaagtttatcttaggattcacccccttcttcctcaatagatt
tttaacaaaacgagcgattgcaatttcttcagttggtctctgttgcttggcagcacttat
gatattgccaatccagtactacgacattcaatgcatgcggtgggtaattataatgctatc
gttaatgatagccgcaggaattgacccaacgtggaagatcaatcatctctactcagcaga
gctgtttccaacgtctgttagaagtatggctagaggtgtttgtaatgcgggaggtcgact
tggatcagtaatggctccaatgttggtcgtaattgtgatcttcttgcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGGTTTCAGTGCTCCAACGCAT 270 3 1005 Antisense
AACCAACAGCTGTCATGTGCTACTC 510 147 1082 Antisense
GTGCTACTCATTTATGGCTTCTTCC 48 481 1098 Antisense
GGCTTCTTCCATTGTTTCATTTGGC 606 537 1113 Antisense
GGCTTTTACTTCTCCATTGATGTTC 194 537 1135 Antisense
TTCTCCCAGGCAACCGATACTACAA 422 691 1157 Antisense
CTTCAGTTGGTCTCTGTTGCTTGGC 633 221 1271 Antisense
GATAGCCGCAGGAATTGACCCAACG 189 425 1371 Antisense
AGAGCTGTTTCCAACGTCTGTTAGA 683 69 1422 Antisense
ATGCGGGAGGTCGACTTGGATCAGT 495 39 1469 Antisense
GTCGTAATTGTGATCTTCTTGCCCG 148 473 1510 Antisense
Sequence Source Affymetrix Proprietary Database