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[191902_s_at] murine modifier 2 protein like

Description K08H2.6 /REP_DB=WormBase Gene ID /WP=CE06164 /TR=Q21370 /GB=CAA94152.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=murine modifier 2 protein like
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 81      6grp_total > 81      4grp_total > 0      6grp_highest_sub > 04      6grp_cgc > 84      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 262.1
(-1.7)
P 		226.3
(-3)
P 		390
(3)
P 		339.1
(1.1)
P 		164
B 308.3
(0.2)
P 		249.6
(-3)
P 		261.6
(-2.3)
P 		358.2
(3)
P 		109
C 304.4
(0.2)
P 		267.8
(-1.8)
P 		245.5
(-3)
P 		355.1
(3)
P 		110
avr 291.6
(-0.5) 		247.9
(-3) 		299
(-0) 		350.8
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 328.9
(2)
P 		200.7
(-2)
P 		250.8
(-0.4)
P 		359.8
(3)
P 		246.1
(-0.5)
P 		167.1
(-3)
P 		193
B 229.7
(-0.6)
P 		211.2
(-1.2)
P 		217.7
(-1)
P 		306.9
(2.1)
P 		332.6
(3)
P 		160.9
(-3)
P 		172
C 225
(-1.4)
P 		416.7
(3)
P 		327.5
(1)
P 		280.5
(-0.1)
P 		234.8
(-1.2)
P 		153.8
(-3)
P 		263
avr 261.2
(0.9) 		276.2
(1.5) 		265.3
(1.1) 		315.7
(3) 		271.2
(1.3) 		160.6
(-3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 95.4
(2.3)
P 		49.1
(-3)
P 		101.9
(3)
P 		49.6
(-2.9)
P 		53
B 98.3
(3)
P 		61.7
(-2.8)
P 		60.6
(-3)
P 		76.3
(-0.5)
P 		38
C 100.8
(3)
P 		77
(-0.5)
P 		85.6
(0.8)
P 		59.9
(-3)
P 		41
avr 98.2
(3) 		62.6
(-2.9) 		82.7
(0.4) 		61.9
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 60.6
(-0.6)
P 		71.4
(0.6)
P 		54.6
(-1.3)
P 		91.2
(3)
P 		74.3
(1)
P 		40.7
(-3)
P 		51
B 79.9
(-1)
P 		70.3
(-1.7)
P 		52.9
(-3)
P 		81.3
(-0.9)
P 		135.1
(3)
P 		60
(-2.5)
P 		82
C 83.4
(-0.5)
P 		127.2
(3)
P 		83.4
(-0.5)
P 		56.4
(-2.6)
P 		76
(-1.1)
P 		51.5
(-3)
P 		76
avr 74.6
(0.2) 		89.6
(2.3) 		63.6
(-1.3) 		76.3
(0.5) 		95.1
(3) 		50.7
(-3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191902_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17630
Sequence Type Exemplar sequence
Representative Public ID K08H2.6 NCBI
Target Description K08H2.6 /REP_DB=WormBase Gene ID /WP=CE06164 /TR=Q21370 /GB=CAA94152.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=murine modifier 2 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077798 NCBI Caenorhabditis elegans HP1 Like (heterochromatin protein) family member (hpl-1) (hpl-1) mRNA, complete cds. 11/11 A 
SNAP00000000975 ENSEMBL cdna:SNAP chromosome:CEL140:X:13245348:13246755:1 11/11 None
GENEFINDER00000000986 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13245348:13246755:1 11/11 None
K08H2.6 ENSEMBL cdna:known chromosome:CEL140:X:13245326:13246966:1 gene:K08H2.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13245347-13246755(+) 100.0 100.0
Public Domain and Genome References
Gene Title murine modifier 2 protein like
Gene Symbol hpl-1
Ensembl K08H2.6
Entrez Gene 181450 Entrez gene
SwissProt Q21370 EMBL-EBI
WormBase CE06164 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94152 Hypothetical protein K08H2.6 [Caenorhabditis elegans] ref|NP_510199.1| HP1 Like (heterochromatin protein) family member (hpl-1) [Caenorhabditis elegans] gb|AAC78602.1| heterochromatin protein 1 homolog [Caenorhabditis elegans] 7.0E-94
blast CAB07241 Hypothetical protein K01G5.2a [Caenorhabditis elegans] ref|NP_001022652.1| HP1 Like (heterochromatin protein) family member (hpl-2) [Caenorhabditis elegans] gb|AAD21197.1| chromo-domain protein [Caenorhabditis elegans] 1.0E-31
blast CAB54267 Hypothetical protein K01G5.2c [Caenorhabditis elegans] ref|NP_001022654.1| HP1 Like (heterochromatin protein) family member (hpl-2) [Caenorhabditis elegans] 3.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR008251 EMBL-EBI Chromo shadow 3.2E-35
Pfam IPR000953 EMBL-EBI Chromo 3.9E-19
Sequence
Target Sequence 
>C. ELEGANS:191902_S_AT
gcactcgcgggaattcactcagagctcgggaagctcagcaggcacaagatgctccgttgt
ttcaggaatcctccagcaacgtcttcgtggtggaaaaagtgttgaataaacggttgacgc
gtggcggaagcgagtactatataaaatggcagggattcccagagtccgagtgcagttggg
agccaattgagaacctccagtgcgataggatgattcaggaatacgagaaggaagcggcaa
agcgcacaacacgcaaacgtcgatattccccacaaccgtcgacttcgtcttctgcagagc
tccaaccatctaccagcgatgaatgggctgggaaaacactgaagacaattattggaatca
ccaaggcacccggagaactgcatttcttgtgcaagttcagcgacgactctgtgcatttga
ttccattgagagaagccaatgttcgttttccaagtcaagtcatcaaattctacgaaaccc
gtcttgttcttcaaggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTCGCGGGAATTCACTCAGAGC 61 317 38 Antisense
GATGCTCCGTTGTTTCAGGAATCCT 121 415 85 Antisense
ATGGCAGGGATTCCCAGAGTCCGAG 155 53 183 Antisense
GAGTCCGAGTGCAGTTGGGAGCCAA 64 397 199 Antisense
GAGCCAATTGAGAACCTCCAGTGCG 200 385 217 Antisense
AACACGCAAACGTCGATATTCCCCA 61 135 285 Antisense
CAAGGCACCCGGAGAACTGCATTTC 263 183 399 Antisense
GCAAGTTCAGCGACGACTCTGTGCA 514 321 428 Antisense
GACTCTGTGCATTTGATTCCATTGA 584 373 442 Antisense
AAGCCAATGTTCGTTTTCCAAGTCA 77 149 470 Antisense
GAAACCCGTCTTGTTCTTCAAGGAG 201 259 511 Antisense
Sequence Source Affymetrix Proprietary Database