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[191901_at] 7TM chemoreceptor, sri family

Description C54E10.4 /REP_DB=WormBase Gene ID /WP=CE19771 /TR=O45314 /GB=CAB03997.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=RNA dependant RNA polymerase
Cluster 6grp_total > 29      4grp_total > 34      6grp_cgc > 89      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 45.6
(-3)
A 		61.4
(-1.2)
A 		49.5
(-2.5)
A 		97.2
(3)
A 		52
B 5.5
(-3)
A 		68.6
(3)
A 		49.8
(1.2)
A 		17.9
(-1.8)
A 		63
C 49.7
(-3)
A 		55.7
(-0.3)
A 		52.4
(-1.8)
A 		63
(3)
A 		13
avr 33.6
(-3) 		61.9
(3) 		50.6
(0.6) 		59.4
(2.5) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 8.9
(-3)
A 		11.1
(-2.7)
A 		53.3
(3)
A 		24.2
(-0.9)
A 		21.3
(-1.3)
A 		33.2
(0.3)
A 		44
B 40.9
(3)
A 		5.8
(-3)
A 		14.5
(-1.5)
A 		9
(-2.5)
A 		39.7
(2.8)
A 		37.2
(2.4)
A 		35
C 42
(3)
A 		27.1
(0.5)
A 		15.9
(-1.4)
A 		6.9
(-2.9)
A 		42.2
(3)
A 		6.4
(-3)
A 		36
avr 30.6
(1.9) 		14.7
(-2.6) 		27.9
(1.1) 		13.4
(-3) 		34.4
(3) 		25.6
(0.5) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16.6
(3)
A 		13.3
(-2.4)
A 		12.9
(-3)
A 		14.2
(-0.9)
A 		4
B 1.8
(-3)
A 		16.9
(3)
A 		11.5
(0.9)
A 		3.8
(-2.2)
A 		15
C 16.5
(1.6)
A 		16
(1.2)
A 		18.3
(3)
A 		10.6
(-3)
A 		8
avr 11.6
(-0.9) 		15.4
(3) 		14.2
(1.8) 		9.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.6
(-3)
A 		3.9
(-1.6)
A 		11.6
(3)
A 		6.1
(-0.3)
A 		6.4
(-0.1)
A 		8.1
(0.9)
A 		10
B 14.2
(2.2)
A 		1.9
(-3)
A 		3.5
(-2.3)
A 		2.4
(-2.8)
A 		16.1
(3)
A 		13.9
(2.1)
A 		14
C 15.6
(3)
A 		8.3
(-0.1)
A 		4.1
(-1.9)
A 		1.4
(-3)
A 		13.7
(2.2)
A 		2.2
(-2.7)
A 		14
avr 10.5
(1.9) 		4.7
(-2) 		6.4
(-0.9) 		3.3
(-3) 		12.1
(3) 		8.1
(0.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12525
Sequence Type Exemplar sequence
Representative Public ID C54E10.4 NCBI
Target Description C54E10.4 /REP_DB=WormBase Gene ID /WP=CE19771 /TR=O45314 /GB=CAB03997.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=RNA dependant RNA polymerase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075273(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075273 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-10) (sri-10) mRNA, complete cds. 10/11 None
GENEFINDER00000040267 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18806657:18809082:-1 11/11 None
C54E10.4 ENSEMBL cdna:known chromosome:CEL140:V:18806657:18809082:-1 gene:C54E10.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040254 2/11 Cross Hyb Matching Probes None
SNAP00000040255 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18806656-18809082(-) 99.54 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-10
Ensembl C54E10.4
Entrez Gene 183794 Entrez gene
SwissProt O45314 EMBL-EBI
WormBase CE33605 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03997 Hypothetical protein C54E10.4 [Caenorhabditis elegans] ref|NP_507674.2| Serpentine Receptor, class I family member (sri-10) [Caenorhabditis elegans] 0.0
blast CAB04750 Hypothetical protein T22H2.3 [Caenorhabditis elegans] ref|NP_492979.2| Serpentine Receptor, class I family member (sri-11) [Caenorhabditis elegans] 1.0E-125
blast CAB04753 Hypothetical protein T22H2.1 [Caenorhabditis elegans] ref|NP_492980.2| Serpentine Receptor, class I family member (sri-12) [Caenorhabditis elegans] 1.0E-125
blast CAB04750 Hypothetical protein T22H2.3 [Caenorhabditis elegans] ref|NP_492979.2| Serpentine Receptor, class I family member (sri-11) [Caenorhabditis elegans] 1.0E-122
blast CAB04753 Hypothetical protein T22H2.1 [Caenorhabditis elegans] ref|NP_492980.2| Serpentine Receptor, class I family member (sri-12) [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.3E-96
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.2E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507674.2 7 15-37,58-80,95-115,136-155,192-214,243-265,280-302
C54E10.4 7 15-37,58-80,95-115,136-155,192-214,243-265,280-302
GENEFINDER00000040267 7 15-37,58-80,95-115,136-155,209-231,260-282,297-319
Sequence
Target Sequence 
>C. ELEGANS:191901_AT
gcaggtaatggacatccggacacccagacctacttttttcctcgaaattttacagaatta
cccccaatgcttgagctggatggcttatgatggctttgaagcttataactggcaagtgaa
cacgtggattccagtggcagggctcggaggaattggttgggtctttgtggttgcaagcta
ctgtttataccttggcgtacacactatgatgattctccaacgtttacgtgctcacatgtc
cccccaaacctaccaaatgcacagaacagccctcataagcctgaccatgcaaatggtgat
ccccggaatgcttctaacaacccctttgtacatgattctagtagtaattatgacaaattc
attggcttttgaagagctggcctccaccttctccttcctaatgtcctcccactcaatgtg
tcagtgttttgtaatggttatgagcaatggggtataccgacgggtacttaaggagaaggt
tttcagattgttaagacttccagttccaaatgagagtcaggtggggagcctcgttgagcc
aagcatgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGTAATGGACATCCGGACACCC 472 293 513 Antisense
AATTACCCCCAATGCTTGAGCTGGA 318 173 568 Antisense
CACGTGGATTCCAGTGGCAGGGCTC 633 197 633 Antisense
GAATTGGTTGGGTCTTTGTGGTTGC 700 321 662 Antisense
GCTACTGTTTATACCTTGGCGTACA 164 303 689 Antisense
GGCGTACACACTATGATGATTCTCC 556 541 706 Antisense
GATTCTCCAACGTTTACGTGCTCAC 298 431 723 Antisense
AAATGGTGATCCCCGGAATGCTTCT 65 121 803 Antisense
TGCTTCTAACAACCCCTTTGTACAT 9 577 821 Antisense
GGCTTTTGAAGAGCTGGCCTCCACC 493 535 876 Antisense
GAGCCTCGTTGAGCCAAGCATGAGA 316 385 1038 Antisense
Sequence Source Affymetrix Proprietary Database