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[191900_s_at] protein-tyrosine phosphatase /// ---

Description M04G7.2 /REP_DB=WormBase Gene ID /WP=CE17191 /TR=O44180 /GB=AAB88365.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 99      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 17.6
(-2.2)
A 		27.2
(-1.3)
A 		8.8
(-3)
A 		74.6
(3)
A 		66
B 8.8
(-2.3)
A 		15.1
(-1.3)
A 		4.3
(-3)
A 		41.8
(3)
A 		38
C 33.4
(3)
A 		17.7
(-3)
A 		24.6
(-0.4)
A 		31.6
(2.3)
A 		16
avr 19.9
(-1.8) 		20
(-1.8) 		12.6
(-3) 		49.3
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 21.4
(-0.9)
A 		4.4
(-3)
A 		25.5
(-0.4)
A 		41.2
(1.6)
A 		52.4
(3)
A 		37.3
(1.1)
A 		48
B 23
(0.2)
A 		3.7
(-2.9)
A 		4.2
(-2.8)
A 		3
(-3)
A 		40.4
(3)
A 		34.6
(2.1)
A 		37
C 21.1
(0)
A 		20.1
(-0.2)
A 		4.2
(-3)
A 		5.9
(-2.7)
A 		26.7
(1)
A 		38
(3)
P 		34
avr 21.8
(-0.6) 		9.4
(-3) 		11.3
(-2.6) 		16.7
(-1.6) 		39.8
(3) 		36.6
(2.4) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.4
(-0.1)
A 		5.9
(-0.5)
A 		2.3
(-3)
A 		10.9
(3)
A 		9
B 2.8
(-1.6)
A 		3.7
(-0.9)
A 		1
(-3)
A 		8.9
(3)
A 		8
C 11.1
(3)
A 		5.1
(-3)
A 		8.6
(0.5)
A 		5.3
(-2.8)
A 		6
avr 6.8
(0.8) 		4.9
(-1.8) 		4
(-3) 		8.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.9
(-2)
A 		1.6
(-3)
A 		5.5
(-1.4)
A 		10.5
(0.8)
A 		15.8
(3)
A 		9.1
(0.2)
A 		14
B 8
(-0.2)
A 		1.2
(-2.8)
A 		1
(-2.9)
A 		0.8
(-3)
A 		16.4
(3)
A 		12.9
(1.7)
A 		16
C 7.8
(0.5)
A 		6.1
(-0.4)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		8.6
(0.9)
A 		12.7
(3)
P 		12
avr 6.6
(-0.8) 		3
(-2.7) 		2.5
(-3) 		4.2
(-2.1) 		13.6
(3) 		11.6
(1.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191900_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10363
Sequence Type Exemplar sequence
Representative Public ID M04G7.2 NCBI
Target Description M04G7.2 /REP_DB=WormBase Gene ID /WP=CE17191 /TR=O44180 /GB=AAB88365.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068405(11), NM_067533(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068405 NCBI Caenorhabditis elegans ZK616.7 (ZK616.7) mRNA, complete cds. 11/11 A 
NM_067533 NCBI Caenorhabditis elegans M04G7.2 (M04G7.2) mRNA, complete cds. 11/11 A 
SNAP00000016319 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5408414:5410280:-1 11/11 None
GENEFINDER00000016323 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5408414:5412137:-1 11/11 None
SNAP00000026150 ENSEMBL cdna:SNAP chromosome:CEL140:IV:458063:459815:-1 11/11 None
GENEFINDER00000026154 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:458063:460978:-1 11/11 None
M04G7.2 ENSEMBL cdna:known chromosome:CEL140:IV:458032:460549:-1 gene:M04G7.2 11/11 A 
ZK616.7 ENSEMBL cdna:known chromosome:CEL140:IV:5408414:5409417:-1 gene:ZK616.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:458062-460447(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase

Ensembl M04G7.2
ZK616.7
Entrez Gene 187449 Entrez gene
191361 Entrez gene
SwissProt O44180 EMBL-EBI
Q9N4M9 EMBL-EBI
WormBase CE17191 Wormbase
CE26346 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB88365 Hypothetical protein M04G7.2 [Caenorhabditis elegans] ref|NP_499934.1| M04G7.2 [Caenorhabditis elegans] 0.0
blast AAF60945 Hypothetical protein ZK616.7 [Caenorhabditis elegans] ref|NP_500806.1| ZK616.7 [Caenorhabditis elegans] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.2E-102
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.4E-100
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.4E-100
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.4E-100
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.2E-102
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.2E-102
Sequence
Target Sequence 
>C. ELEGANS:191900_S_AT
caacggtgaacaagtctctggtgacgactcgcctcaacttgagctatgagggcgagacgc
gattgatcactcactggctatggaaggaatggcccgactggcaagtgcctgaatcctcag
aggtcatgctgaagatcttgagaaagatcagagcgagaagtacacctccagttattcatt
gttcggcgggagttggccgttcgggaacgctgatggctgttgagattgcattgcaatcga
ttcatactcacttcacgctgccggatatcaagcagattgtgagccacctgcgcgtgactg
ggcgagcggcgtcggtgcagactctccagcagtacatgctcatttggaaggtgctcctgg
attttggagttgcctacaagcaaataacggaggagctcgctgagaagttcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACGGTGAACAAGTCTCTGGTGAC 324 181 1211 Antisense
TATGGAAGGAATGGCCCGACTGGCA 294 655 1289 Antisense
GAGCGAGAAGTACACCTCCAGTTAT 158 381 1361 Antisense
CCAGTTATTCATTGTTCGGCGGGAG 39 273 1378 Antisense
TTGTTCGGCGGGAGTTGGCCGTTCG 658 613 1389 Antisense
GTTCGGGAACGCTGATGGCTGTTGA 284 441 1409 Antisense
TGCAGACTCTCCAGCAGTACATGCT 592 577 1526 Antisense
GTACATGCTCATTTGGAAGGTGCTC 679 459 1542 Antisense
TTGGAAGGTGCTCCTGGATTTTGGA 253 709 1554 Antisense
TGGATTTTGGAGTTGCCTACAAGCA 85 545 1568 Antisense
GGAGGAGCTCGCTGAGAAGTTCAAC 580 515 1599 Antisense
Sequence Source Affymetrix Proprietary Database