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[191896_at] protein-tyrosine phoshatase

Description H06I04.5 /REP_DB=WormBase Gene ID /WP=CE27181 /TR=Q9N5P3 /GB=AAF39870.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phoshatase
Cluster 6grp_total > 98      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 28.9
(-3)
A 		55.7
(-1.3)
P 		46.7
(-1.9)
A 		122.5
(3)
A 		94
B 28.8
(-3)
A 		38.7
(-1)
A 		58.6
(3)
A 		29
(-3)
A 		30
C 44.8
(0.1)
A 		49.2
(0.5)
A 		4.3
(-3)
A 		82
(3)
A 		78
avr 34.2
(-3) 		47.9
(-1.1) 		36.5
(-2.7) 		77.8
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 29.3
(-1.2)
A 		36.5
(-0.7)
A 		2
(-3)
A 		35.6
(-0.8)
P 		47.2
(0)
A 		92.1
(3)
P 		90
B 44.8
(-1.8)
P 		47.6
(-1.3)
A 		39.4
(-2.7)
A 		37.6
(-3)
A 		52.3
(-0.5)
P 		72.5
(3)
P 		35
C 36.4
(-0.1)
A 		3
(-3)
A 		32.2
(-0.5)
A 		27.7
(-0.9)
A 		72.5
(3)
M 		56
(1.6)
P 		70
avr 36.8
(-1.5) 		29
(-2.4) 		24.5
(-3) 		33.6
(-1.9) 		57.3
(1) 		73.5
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.5
(-3)
A 		12.1
(-1.7)
P 		12.2
(-1.6)
A 		17.9
(3)
A 		7
B 9.2
(-0.6)
A 		9.6
(-0.2)
A 		13.6
(3)
A 		6.2
(-3)
A 		7
C 14.8
(3)
A 		14.1
(2.7)
A 		1.5
(-3)
A 		13.8
(2.5)
A 		13
avr 11.5
(1.1) 		11.9
(1.8) 		9.1
(-3) 		12.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.4
(-1.6)
A 		13
(0.4)
A 		0.4
(-3)
A 		9
(-0.7)
P 		14.2
(0.8)
A 		22.4
(3)
P 		22
B 15.6
(-0.9)
P 		15.9
(-0.8)
A 		9.6
(-3)
A 		9.9
(-2.9)
A 		21.2
(1)
P 		27
(3)
P 		17
C 13.5
(0.3)
A 		0.9
(-3)
A 		8.2
(-1.1)
A 		5.6
(-1.8)
A 		23.5
(3)
M 		18.7
(1.7)
P 		23
avr 11.5
(-1) 		9.9
(-1.6) 		6.1
(-3) 		8.2
(-2.2) 		19.6
(1.9) 		22.7
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191896_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6352
Sequence Type Exemplar sequence
Representative Public ID H06I04.5 NCBI
Target Description H06I04.5 /REP_DB=WormBase Gene ID /WP=CE27181 /TR=Q9N5P3 /GB=AAF39870.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phoshatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065251 NCBI Caenorhabditis elegans H06I04.5 (H06I04.5) mRNA, complete cds. 11/11 None
SNAP00000025106 ENSEMBL cdna:SNAP chromosome:CEL140:III:3052877:3057540:1 11/11 None
GENEFINDER00000025127 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3052906:3057540:1 11/11 None
H06I04.5 ENSEMBL cdna:known chromosome:CEL140:III:3054793:3057540:1 gene:H06I04.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3054792-3057540(+) 96.38 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phoshatase
Ensembl H06I04.5
Entrez Gene 175411 Entrez gene
SwissProt Q9N5P3 EMBL-EBI
WormBase CE23797 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39870 Hypothetical protein H06I04.5 [Caenorhabditis elegans] ref|NP_497652.2| H06I04.5 [Caenorhabditis elegans] 0.0
blast AAB52891 Hypothetical protein T20B6.2 [Caenorhabditis elegans] ref|NP_497635.1| T20B6.2 [Caenorhabditis elegans] 1.0E-128
blast AAB52891 Hypothetical protein T20B6.2 [Caenorhabditis elegans] ref|NP_497635.1| T20B6.2 [Caenorhabditis elegans] 1.0E-110
blast AAK18987 Hypothetical protein W03F11.4 [Caenorhabditis elegans] ref|NP_490945.1| W03F11.4 [Caenorhabditis elegans] 4.0E-94
blast CAB04464 Hypothetical protein F54F12.1 [Caenorhabditis elegans] ref|NP_499709.1| F54F12.1 [Caenorhabditis elegans] 1.0E-93
blast CAB04464 Hypothetical protein F54F12.1 [Caenorhabditis elegans] ref|NP_499709.1| F54F12.1 [Caenorhabditis elegans] 3.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.9E-30
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-56
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.5E-26
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-56
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497652.2 1 126-148
H06I04.5 1 126-148
SNAP00000025106 1 767-789
GENEFINDER00000025127 1 658-680
Sequence
Target Sequence 
>C. ELEGANS:191896_AT
gaaaactgtcgacattctgctctactctgcatggcctgaacacggagcaccacaagaagc
gtacccggctctggaaatcctgaaattctgtgagacctataagaagaatgtgctcgtgca
ctgctcggagggagttgggagaactggaacgctggttgctatcaaatatggaattgattt
gtgtctgaagaagaaagtcactcagattattgacatcattctccctgtccgccaatgccg
tcacggagccgttcaagacgacacccaagtgacatacattctgctttgcgtgactaaagg
attaatggagaagatgccggtgccatatctgagaagtttcgatgctgtacagtattatca
caaacagctgctcaacaatttctatcatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACTGTCGACATTCTGCTCTAC 201 355 1317 Antisense
CTGCATGGCCTGAACACGGAGCACC 340 237 1343 Antisense
ACGGAGCACCACAAGAAGCGTACCC 126 95 1358 Antisense
CTCGTGCACTGCTCGGAGGGAGTTG 420 213 1429 Antisense
GAACTGGAACGCTGGTTGCTATCAA 495 347 1457 Antisense
ATTATTGACATCATTCTCCCTGTCC 692 13 1522 Antisense
GTCACGGAGCCGTTCAAGACGACAC 223 463 1556 Antisense
GTGACATACATTCTGCTTTGCGTGA 144 483 1585 Antisense
GATGCCGGTGCCATATCTGAGAAGT 95 415 1629 Antisense
GTATTATCACAAACAGCTGCTCAAC 358 453 1668 Antisense
GCTGCTCAACAATTTCTATCATCCA 530 297 1683 Antisense
Sequence Source Affymetrix Proprietary Database