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[191891_at] protein-tyrosine phosphotase

Description T19D2.2 /REP_DB=WormBase Gene ID /WP=CE07515 /TR=Q22582 /GB=AAA83602.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein-tyrosine phosphotase
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 51      6grp_total > 14      4grp_total > 46      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 476
1 2 3 4 range
A 1016
(3)
P 		544.8
(-3)
P 		762
(-0.2)
P 		866.9
(1.1)
P 		471
B 779.3
(-2.4)
P 		859.2
(3)
P 		770.6
(-3)
P 		803.7
(-0.8)
P 		89
C 1021.2
(3)
P 		1018.8
(3)
P 		740.3
(-1.9)
P 		677.7
(-3)
P 		344
avr 938.8
(3) 		807.6
(-1.3) 		757.6
(-3) 		782.8
(-2.2) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 499
1 2 3 4 5 6 range
A 609.7
(0.9)
P 		578.2
(-0.2)
P 		520.8
(-2.3)
P 		667.7
(3)
P 		502.3
(-3)
P 		575.3
(-0.4)
P 		165
B 816.8
(3)
P 		643.2
(0.3)
P 		626
(0)
P 		552.6
(-1.1)
P 		575.2
(-0.8)
P 		431.6
(-3)
P 		385
C 930.2
(3)
P 		669
(-0.6)
P 		767.3
(0.7)
P 		659.7
(-0.8)
P 		554.1
(-2.2)
P 		498
(-3)
P 		432
avr 785.6
(3) 		630.1
(-0.3) 		638
(-0.1) 		626.7
(-0.4) 		543.9
(-2.1) 		501.6
(-3) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 369.9
(3)
P 		118.3
(-3)
P 		199.2
(-1.1)
P 		126.9
(-2.8)
P 		252
B 248.5
(3)
P 		212.2
(0.2)
P 		178.6
(-2.4)
P 		171.3
(-3)
P 		77
C 338
(3)
P 		292.9
(1.8)
P 		258
(0.9)
P 		114.3
(-3)
P 		224
avr 318.8
(3) 		207.8
(-0.7) 		211.9
(-0.5) 		137.5
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 112.4
(-3)
P 		205.7
(3)
P 		113.4
(-2.9)
P 		169.3
(0.7)
P 		151.6
(-0.5)
P 		140.1
(-1.2)
P 		93
B 284.2
(3)
P 		214.1
(-0.1)
P 		152
(-2.8)
P 		146.4
(-3)
P 		233.7
(0.8)
P 		160.9
(-2.4)
P 		138
C 344.8
(3)
P 		204.1
(-1)
P 		195.3
(-1.2)
P 		132.7
(-3)
P 		179.3
(-1.7)
P 		166.7
(-2)
P 		212
avr 247.1
(3) 		208
(0.6) 		153.6
(-2.7) 		149.5
(-3) 		188.2
(-0.6) 		155.9
(-2.6) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18226
Sequence Type Exemplar sequence
Representative Public ID T19D2.2 NCBI
Target Description T19D2.2 /REP_DB=WormBase Gene ID /WP=CE07515 /TR=Q22582 /GB=AAA83602.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein-tyrosine phosphotase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076282 NCBI Caenorhabditis elegans T19D2.2 (prl-1) mRNA, complete cds. 11/11 None
SNAP00000037614 ENSEMBL cdna:SNAP chromosome:CEL140:X:3940828:3941499:-1 11/11 None
GENEFINDER00000037616 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3940828:3941499:-1 11/11 None
T19D2.2 ENSEMBL cdna:known chromosome:CEL140:X:3940119:3943291:-1 gene:T19D2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3940828-3941500(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphotase
Gene Symbol prl-1
Ensembl T19D2.2
Entrez Gene 180677 Entrez gene
SwissProt Q22582 EMBL-EBI
WormBase CE07515 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16259.1.A1_AT similar to protein tyrosine phosphatase 4a1 cfa
CANINE_2:CFA.21276.1.S1_AT similar to protein tyrosine phosphatase 4a1 cfa
CANINE_2:CFAAFFX.4605.1.S1_S_AT similar to protein tyrosine phosphatase 4a1 cfa
DROSOPHILA_2:1631728_S_AT dm
DROSGENOME1:144024_AT dm
CHICKEN:GGA.4888.1.S1_S_AT protein tyrosine phosphatase type IVA, member 1 gga
CHICKEN:GGAAFFX.12836.1.S1_AT protein tyrosine phosphatase type IVA, member 1 gga
CHICKEN:GGAAFFX.12836.1.S1_S_AT protein tyrosine phosphatase type IVA, member 1 gga
CHICKEN:GGA.18931.1.S1_AT Protein tyrosine phosphatase type IVA, member 1 gga
HG-U133_PLUS_2:200731_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133A_2:200731_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133A:200731_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133_PLUS_2:200730_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133A_2:200730_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133A:200730_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133_PLUS_2:200732_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133A_2:200732_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133A:200732_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U95AV2:843_AT protein tyrosine phosphatase type IVA, member 1 hs
HC-G110:843_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133A:200733_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133_PLUS_2:200733_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133A_2:200733_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-FOCUS:200733_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HU35KSUBB:RC_T40895_AT protein tyrosine phosphatase type IVA, member 1 hs
HU35KSUBD:RC_AA620667_S_AT protein tyrosine phosphatase type IVA, member 1 hs
HUGENEFL:U48296_AT protein tyrosine phosphatase type IVA, member 1 hs
U133_X3P:G1777754_3P_A_AT protein tyrosine phosphatase type IVA, member 1 hs
U133_X3P:HS.227777.0.S5_3P_A_AT protein tyrosine phosphatase type IVA, member 1 hs
U133_X3P:HS.227777.0.S4_3P_A_AT protein tyrosine phosphatase type IVA, member 1 hs
U133_X3P:HS.227777.0.S1_3P_X_AT protein tyrosine phosphatase type IVA, member 1 hs
U133_X3P:HS.227777.0.S1_3P_A_AT protein tyrosine phosphatase type IVA, member 1 hs
U133_X3P:HS.166629.0.A1_3P_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133_PLUS_2:240329_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U133B:240329_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U95AV2:33413_AT protein tyrosine phosphatase type IVA, member 1 hs
HG-U95D:82524_AT protein tyrosine phosphatase type IVA, member 1 hs
U133_X3P:HS2.166629.1.S1_3P_AT Protein tyrosine phosphatase type IVA, member 1 hs
HG-U133_PLUS_2:1559322_AT Protein tyrosine phosphatase type IVA, member 1 hs
HG-U95E:67772_AT Protein tyrosine phosphatase type IVA, member 1 hs
MOE430A:1419024_AT protein tyrosine phosphatase 4a1 mm
MOUSE430A_2:1419024_AT protein tyrosine phosphatase 4a1 mm
MOUSE430_2:1419024_AT protein tyrosine phosphatase 4a1 mm
MOUSE430A_2:1449322_AT protein tyrosine phosphatase 4a1 mm
MOUSE430_2:1449322_AT protein tyrosine phosphatase 4a1 mm
MOE430A:1449322_AT protein tyrosine phosphatase 4a1 mm
MU11KSUBA:U84411_S_AT protein tyrosine phosphatase 4a1 mm
MG-U74AV2:94489_AT protein tyrosine phosphatase 4a1 mm
MG-U74BV2:114116_AT protein tyrosine phosphatase 4a1 mm
MOE430A:1455002_AT protein tyrosine phosphatase 4a1 mm
MOUSE430A_2:1455002_AT protein tyrosine phosphatase 4a1 mm
MOUSE430_2:1455002_AT protein tyrosine phosphatase 4a1 mm
MOE430A:1438657_X_AT protein tyrosine phosphatase 4a1 mm
MOUSE430A_2:1438657_X_AT protein tyrosine phosphatase 4a1 mm
MOUSE430_2:1438657_X_AT protein tyrosine phosphatase 4a1 mm
RG-U34A:L27843_S_AT protein tyrosine phosphatase 4a1 rn
RAE230A:1370193_AT protein tyrosine phosphatase 4a1 rn
RAT230_2:1370193_AT protein tyrosine phosphatase 4a1 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83602 C. elegans PRL-1 protein [Caenorhabditis elegans] ref|NP_508683.1| T19D2.2 [Caenorhabditis elegans] gb|AAC17103.1| putative prenylated protein tyrosine phosphatase [Caenorhabditis elegans] 1.0E-106
blast CAE68504 Hypothetical protein CBG14314 [Caenorhabditis briggsae] 5.0E-95
blast XP_393167 PREDICTED: similar to ENSANGP00000011052 [Apis mellifera] 8.0E-50
Sequence
Target Sequence 
>C. ELEGANS:191891_AT
cctccaccaacactgttgctgcaaccacatacttcaagcctgccccgtccgagattgcgt
ggggaaagatgcgcttcctcatcaccgaccgtccgaacaactcttccatccagtcttaca
ttgaagaacttgagaagcacggagcccgagcggtcgtgcgagtctgtgagccaacctatg
atacgttggctctcaaggaagctggcattgatgttctcgattggcaattctccgacggat
caccaccaccaccagaggtgattaaaagctggttccaactttgcatgacatcattcaaag
aacatccggataagagcatcgccgtccactgtgttgcagggctcggcagagcaccagtac
tagtagcaattgcactaatcgaagctggcatgaaatacgaagatgctgttgaaatgatta
gaacgcaacgacgaggagctctcaaccaaaaacagctcaagttcctcgagacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCCACCAACACTGTTGCTGCAAC 476 267 38 Antisense
TGCTGCAACCACATACTTCAAGCCT 487 579 54 Antisense
TGCCCCGTCCGAGATTGCGTGGGGA 28 581 78 Antisense
GTGGGGAAAGATGCGCTTCCTCATC 483 489 96 Antisense
CTCTTCCATCCAGTCTTACATTGAA 582 229 138 Antisense
GAGTCTGTGAGCCAACCTATGATAC 157 399 197 Antisense
CTGGCATTGATGTTCTCGATTGGCA 625 239 239 Antisense
GATTGGCAATTCTCCGACGGATCAC 89 435 256 Antisense
GTTCCAACTTTGCATGACATCATTC 248 441 309 Antisense
GTGTTGCAGGGCTCGGCAGAGCACC 501 485 368 Antisense
AAACAGCTCAAGTTCCTCGAGACAT 225 129 487 Antisense
Sequence Source Affymetrix Proprietary Database