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[191890_s_at]

Description C49A1.4 /REP_DB=WormBase Gene ID /WP=CE15722 /TR=O17670 /GB=CAB05707.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Drosophila clift protein like
Cluster 6grp_high1_10_10 > 46      6grp_total > 37      4grp_total > 30      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 110.6
(3)
A 		96.8
(0.4)
P 		91.9
(-0.5)
A 		78.5
(-3)
A 		32
B 150.3
(3)
P 		110.8
(-1.5)
A 		98.2
(-3)
A 		142.6
(2.1)
A 		52
C 161.6
(3)
P 		104.3
(0.4)
P 		28.2
(-3)
A 		117.9
(1)
A 		133
avr 140.8
(3) 		104
(-0.2) 		72.8
(-3) 		113
(0.5) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 109.5
(0.8)
P 		115.5
(1.3)
P 		112.2
(1)
P 		68.1
(-2.3)
A 		59.1
(-3)
A 		138.7
(3)
P 		80
B 102.7
(2.9)
P 		103.6
(3)
P 		74.2
(-0.2)
A 		79.2
(0.3)
P 		48.4
(-3)
P 		94.9
(2.1)
P 		55
C 162.4
(3)
P 		79.8
(-2.9)
A 		102.8
(-1.3)
P 		78.7
(-3)
P 		104.8
(-1.1)
M 		99.3
(-1.5)
M 		84
avr 124.9
(3) 		99.6
(0.2) 		96.4
(-0.2) 		75.3
(-2.5) 		70.8
(-3) 		111
(1.5) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 40.3
(3)
A 		21
(-1)
P 		24
(-0.4)
A 		11.5
(-3)
A 		29
B 47.9
(3)
P 		27.4
(-1.9)
A 		22.8
(-3)
A 		30.4
(-1.2)
A 		25
C 53.5
(3)
P 		30
(-0.2)
P 		9.8
(-3)
A 		19.9
(-1.6)
A 		44
avr 47.2
(3) 		26.1
(-1.5) 		18.9
(-3) 		20.6
(-2.6) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 20.2
(-2.3)
P 		41.1
(3)
P 		24.4
(-1.2)
P 		17.3
(-3)
A 		17.8
(-2.9)
A 		33.8
(1.2)
P 		24
B 35.7
(3)
P 		34.5
(2.6)
P 		18
(-3)
A 		21
(-2)
P 		19.7
(-2.4)
P 		35.4
(2.9)
P 		18
C 60.2
(3)
P 		24.3
(-1.9)
A 		26.2
(-1.6)
P 		15.8
(-3)
P 		33.9
(-0.6)
M 		33.2
(-0.6)
M 		44
avr 38.7
(3) 		33.3
(1.4) 		22.9
(-1.6) 		18
(-3) 		23.8
(-1.3) 		34.1
(1.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191890_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2346
Sequence Type Exemplar sequence
Representative Public ID C49A1.4 NCBI
Target Description C49A1.4 /REP_DB=WormBase Gene ID /WP=CE15722 /TR=O17670 /GB=CAB05707.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Drosophila clift protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025884(11), NM_001025885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025884 NCBI Caenorhabditis elegans EYA (Drosophila eyes absent) homolog family member (eya-1) (eya-1) mRNA, complete cds. 11/11 None
NM_001025885 NCBI Caenorhabditis elegans EYA (Drosophila eyes absent) homolog family member (eya-1) (eya-1) mRNA, complete cds. 11/11 None
SNAP00000008657 ENSEMBL cdna:SNAP chromosome:CEL140:I:14228991:14233358:-1 11/11 None
GENEFINDER00000008667 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14230450:14235214:-1 11/11 None
C49A1.4 ENSEMBL cdna:known chromosome:CEL140:I:14228901:14239461:-1 gene:C49A1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14228921-14235145(-) 100.0 100.0
Public Domain and Genome References
Ensembl C49A1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05707 Hypothetical protein C49A1.4a [Caenorhabditis elegans] ref|NP_001021055.1| EYA (Drosophila eyes absent) homolog family member (eya-1) [Caenorhabditis elegans] 0.0
blast CAI79139 Hypothetical protein C49A1.4b [Caenorhabditis elegans] ref|NP_001021056.1| EYA (Drosophila eyes absent) homolog family member (eya-1) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:191890_S_AT
tgaaaccaccatggactcgggaccaatcgataatctacgtggacttgacgttatgcgacg
tgtcgcaccaaaatattcagctttccggcaattttacacagaaaattcgacaaaaaatga
cgtggctgggtttaagcaggagcagaatggatttaattttgagctcctggaacgcgtcgg
atttggagcccgtgaggccacagagctctaccagtctgcaatccagctccagaccctccc
caatttcggtcaacgctggccatgtgctcagcgttgtatggaccttgtagtggaaaagtc
gaagctctcagctgaaaaatacgcgaatgtagtgctctccaacgacggacttgtgctcgg
agctgctcaactgatgatctcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAACCACCATGGACTCGGGACCA 420 569 804 Antisense
TTCAGCTTTCCGGCAATTTTACACA 382 683 879 Antisense
GCTCCTGGAACGCGTCGGATTTGGA 333 281 966 Antisense
ATTTGGAGCCCGTGAGGCCACAGAG 569 15 984 Antisense
CACAGAGCTCTACCAGTCTGCAATC 254 195 1002 Antisense
GTCAACGCTGGCCATGTGCTCAGCG 78 465 1052 Antisense
TGCTCAGCGTTGTATGGACCTTGTA 690 579 1068 Antisense
GTGGAAAAGTCGAAGCTCTCAGCTG 121 491 1093 Antisense
ATACGCGAATGTAGTGCTCTCCAAC 464 23 1122 Antisense
CCAACGACGGACTTGTGCTCGGAGC 295 277 1142 Antisense
GGAGCTGCTCAACTGATGATCTCAG 674 521 1162 Antisense
Sequence Source Affymetrix Proprietary Database