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[191888_at]

Description F29B9.6 /REP_DB=WormBase Gene ID /WP=CE09784 /TR=Q9GYI5 /GB=AAK67232.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ubiquitin-conjugating enzyme
Cluster 6grp_total > 24      4grp_total > 46      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 166.9
(3)
P 		77.6
(-3)
A 		107.5
(-1)
A 		126.8
(0.3)
A 		89
B 219.5
(3)
P 		96.2
(-1.6)
A 		58.5
(-3)
A 		90.9
(-1.8)
A 		161
C 175.9
(2.5)
P 		190.7
(3)
M 		93.1
(-0.5)
A 		25.1
(-3)
A 		166
avr 187.4
(3) 		121.5
(-0.7) 		86.4
(-2.7) 		80.9
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 194
(3)
P 		106.1
(-0.5)
A 		178.1
(2.4)
P 		110.7
(-0.3)
A 		43.9
(-3)
A 		56.7
(-2.5)
A 		150
B 286.8
(3)
P 		144.9
(-0.7)
P 		87.6
(-2.1)
P 		85.5
(-2.2)
A 		54.5
(-3)
A 		67.6
(-2.7)
A 		232
C 130.5
(0.8)
P 		173
(3)
P 		62.1
(-2.7)
A 		90.7
(-1.2)
A 		55.8
(-3)
A 		81.6
(-1.7)
A 		117
avr 203.8
(3) 		141.3
(0.5) 		109.3
(-0.7) 		95.6
(-1.3) 		51.4
(-3) 		68.6
(-2.3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 60.8
(3)
P 		16.8
(-3)
A 		28.1
(-1.5)
A 		18.6
(-2.8)
A 		44
B 70
(3)
P 		23.8
(-1.9)
A 		13.5
(-3)
A 		19.4
(-2.4)
A 		57
C 58.2
(3)
P 		54.8
(2.6)
M 		32.4
(0.1)
A 		4.2
(-3)
A 		54
avr 63
(3) 		31.8
(-0.8) 		24.7
(-1.7) 		14.1
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 35.8
(2.3)
P 		37.7
(2.7)
A 		38.8
(3)
P 		28.1
(0.5)
A 		13.2
(-3)
A 		13.8
(-2.9)
A 		26
B 99.8
(3)
P 		48.2
(-0.9)
P 		21.3
(-3)
P 		22.7
(-2.9)
A 		22.1
(-2.9)
A 		25.2
(-2.7)
A 		79
C 48.4
(2.3)
P 		52.8
(3)
P 		15.8
(-3)
A 		18.2
(-2.6)
A 		18.1
(-2.6)
A 		27.3
(-1.1)
A 		37
avr 61.3
(3) 		46.2
(0.9) 		25.3
(-2) 		23
(-2.3) 		17.8
(-3) 		22.1
(-2.4) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191888_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11095
Sequence Type Exemplar sequence
Representative Public ID F29B9.6 NCBI
Target Description F29B9.6 /REP_DB=WormBase Gene ID /WP=CE09784 /TR=Q9GYI5 /GB=AAK67232.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ubiquitin-conjugating enzyme
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068203(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068203 NCBI Caenorhabditis elegans F29B9.5 (F29B9.5) mRNA, complete cds. 10/11 A 
SNAP00000034764 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4652450:4653062:1 10/11 None
F29B9.5 ENSEMBL cdna:known chromosome:CEL140:IV:4652101:4653150:1 gene:F29B9.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027987 3/11 Cross Hyb Matching Probes None
GENEFINDER00000034775 8/11 Cross Hyb Matching Probes None
F29B9.6.2 3/11 Cross Hyb Matching Probes None
F29B9.6.1 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4651055-4653068(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29B9.5
Entrez Gene 177228 Entrez gene
SwissProt Q95Q57 EMBL-EBI
WormBase CE28013 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500604 F29B9.5 [Caenorhabditis elegans] gb|AAK67231.1| Hypothetical protein F29B9.5 [Caenorhabditis elegans] 1.0E-101
blast T29930 hypothetical protein F29B9.5 - Caenorhabditis elegans 5.0E-98
blast NP_500604 F29B9.5 [Caenorhabditis elegans] gb|AAK67231.1| Hypothetical protein F29B9.5 [Caenorhabditis elegans] 1.0E-84
blast CAE58559 Hypothetical protein CBG01721 [Caenorhabditis briggsae] 8.0E-84
blast CAE58559 Hypothetical protein CBG01721 [Caenorhabditis briggsae] 1.0E-82
blast T29930 hypothetical protein F29B9.5 - Caenorhabditis elegans 2.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.0026
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.0026
Sequence
Target Sequence 
>C. ELEGANS:191888_AT
gatctactattctccaacaatgtccgaattcatgaaaggtgtgatgcttctgaagcaaga
cttgactgaagttcctgccgaagaagctctgaagggcaaggttgttgctctttatttttc
cgcgggatggtgtccaccgtgtaagcagttcactccgaagctagttcgcttctaccatca
tctgaagaaggctggaaagcccatcgaagtggttttcttctctcgtgatagatcaaaggc
tgatcttgaagagaacttcaccgagaagcacggcgattggctctgcgtcaagtatggaga
cgacattttgacacgatatcaatcaaagttcgagatcaagacgatcccagtgctccgagt
gatcaacgcagccggcaagatggtcgttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTACTATTCTCCAACAATGTCC 641 419 417 Antisense
GAAGTTCCTGCCGAAGAAGCTCTGA 570 337 484 Antisense
TATTTTTCCGCGGGATGGTGTCCAC 371 661 529 Antisense
GGTGTCCACCGTGTAAGCAGTTCAC 632 495 545 Antisense
AAGCAGTTCACTCCGAAGCTAGTTC 262 151 559 Antisense
GAAGCTAGTTCGCTTCTACCATCAT 145 341 573 Antisense
GGTTTTCTTCTCTCGTGATAGATCA 163 507 627 Antisense
CGAGAAGCACGGCGATTGGCTCTGC 322 251 678 Antisense
GAGATCAAGACGATCCCAGTGCTCC 409 397 748 Antisense
TGCTCCGAGTGATCAACGCAGCCGG 685 581 767 Antisense
ACGCAGCCGGCAAGATGGTCGTTGT 385 91 782 Antisense
Sequence Source Affymetrix Proprietary Database