[Home] | [Total List]

[191887_s_at] thiol protease

Description W07B8.5 /REP_DB=WormBase Gene ID /WP=CE14682 /GEN=cpr-5 /TR=SW:P43509 /GB=AAB65346.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=thiol protease
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 01      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 05      6grp_total > 23      4grp_total > 58      6grp_cgc > 70      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11026
1 2 3 4 range
A 5562
(-0.1)
P
8476.4
(1.5)
P
11234.6
(3)
P
311.3
(-3)
P
10923
B 5292
(-0.3)
P
8739.2
(1.6)
P
11275.9
(3)
P
250.4
(-3)
P
11026
C 4686.5
(-0.4)
P
9064.6
(2.3)
P
10250.7
(3)
P
304.1
(-3)
P
9947
avr 5180.2
(-0.2)
8760.1
(1.8)
10920.4
(3)
288.6
(-3)
10632

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7016
1 2 3 4 5 6 range
A 8235.2
(3)
P
6909.5
(1.2)
P
6029.7
(0.1)
P
6769.9
(1.1)
P
4282.3
(-2.3)
P
3719.7
(-3)
P
4516
B 7665.3
(3)
P
6570.8
(1.6)
P
7442.5
(2.7)
P
5677.7
(0.5)
P
4719.5
(-0.6)
P
2812.2
(-3)
P
4853
C 9462.2
(3)
P
5967.9
(0)
P
8139.3
(1.9)
P
5117.6
(-0.7)
P
6025.2
(0.1)
P
2446.3
(-3)
P
7016
avr 8454.2
(3)
6482.7
(0.8)
7203.8
(1.6)
5855.1
(0.1)
5009
(-0.8)
2992.7
(-3)
5462
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3527
1 2 3 4 range
A 2025.1
(1.1)
P
1840
(0.7)
P
2936.9
(3)
P
45.6
(-3)
P
2891
B 1687.6
(0.8)
P
2158.4
(1.9)
P
2612.9
(3)
P
53.4
(-3)
P
2560
C 1551.4
(-0.4)
P
2606.1
(1.4)
P
3572.7
(3)
P
51.3
(-3)
P
3521
avr 1754.7
(0.4)
2201.5
(1.3)
3040.8
(3)
50.1
(-3)
2991

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2688
1 2 3 4 5 6 range
A 1518.1
(-0.6)
P
2457.4
(3)
P
1313.1
(-1.4)
P
1717
(0.1)
P
1292.2
(-1.5)
P
905.6
(-3)
P
1552
B 2667.1
(3)
P
2187.1
(1.2)
P
1807.3
(-0.2)
P
1503.8
(-1.3)
P
1917.5
(0.2)
P
1048.7
(-3)
P
1618
C 3507.2
(3)
P
1821
(-0.8)
P
2071.6
(-0.2)
P
1029.2
(-2.5)
P
1949.7
(-0.5)
P
818.9
(-3)
P
2688
avr 2564.1
(3)
2155.2
(1.5)
1730.7
(-0)
1416.7
(-1.2)
1719.8
(-0.1)
924.4
(-3)
1640
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191887_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15289
Sequence Type Exemplar sequence
Representative Public ID W07B8.5 NCBI
Target Description W07B8.5 /REP_DB=WormBase Gene ID /WP=CE14682 /GEN=cpr-5 /TR=SW:P43509 /GB=AAB65346.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=thiol protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070982(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_070982 NCBI Caenorhabditis elegans Cysteine PRotease related family member (cpr-5) (cpr-5) mRNA, complete cds. 11/11 None
SNAP00000016194 ENSEMBL cdna:SNAP chromosome:CEL140:V:1132516:1134937:-1 11/11 None
GENEFINDER00000016197 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1132516:1133784:-1 11/11 None
W07B8.5 ENSEMBL cdna:known chromosome:CEL140:V:1132429:1133807:-1 gene:W07B8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1132515-1133784(-) 100.0 100.0
Public Domain and Genome References
Gene Title thiol protease
Gene Symbol cpr-5
Ensembl W07B8.5
Entrez Gene 178612 Entrez gene
SwissProt P43509 EMBL-EBI
WormBase CE14682 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65346 Cysteine protease related protein 5 [Caenorhabditis elegans] ref|NP_503383.1| Cysteine PRotease related family member (cpr-5) [Caenorhabditis elegans] sp|P43509|CPR5_CAEEL Cathepsin B-like cysteine proteinase 5 precursor (Cysteine protease-related 5) gb|AAA98784.1| cathepsin B-like cysteine proteinase gb|AAA98786.1| cathepsin B-like cysteine proteinase [Caenorhabditis elegans] 0.0
blast CAE58029 Hypothetical protein CBG01103 [Caenorhabditis briggsae] 0.0
blast AAB65345 Hypothetical protein W07B8.4 [Caenorhabditis elegans] ref|NP_503382.1| W07B8.4 [Caenorhabditis elegans] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 5.9E-124
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 5.9E-124
Sequence
Target Sequence
>C. ELEGANS:191887_S_AT
tcatctgaagatctgctctcgtgctgcaccggaatgttcagctgcggaaatggttgcgaa
ggaggttacccaatccaggcatggaagtggtgggtcaagcacggtctcgtcaccggagga
tcctacgagacccagttcggatgcaagccatactcgatcgctccatgcggcgagactgtg
aacggcgtcaagtggccagcatgcccagaagacaccgagccaactccaaagtgtgtcgac
tcctgcacttccaagaacaactacgccaccccatatcttcaggataagcactttggatct
accgcctacgccgtcggaaagaaggtcgagcaaatccagaccgagattcttacgaacgga
ccaatcgaggttgccttcaccgtctacgaggacttctaccaatacaccactggagtgtac
gtacacaccgccggagcctccctcggaggacacgccgtcaagatcctcggatggggagtc
gacaacggaaccccatactggcttgtcgccaactcgtggaacgtcgcctggggagagaag
ggatacttccgtatcattcgtggactcaacgagtgtggaatcgagcactcggctgttgcc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TCATCTGAAGATCTGCTCTCGTGCT 651 621 418 Antisense
GCTCTCGTGCTGCACCGGAATGTTC 335 297 432 Antisense
GAGGTTACCCAATCCAGGCATGGAA 198 401 479 Antisense
GATCCTACGAGACCCAGTTCGGATG 672 413 536 Antisense
CGCTCCATGCGGCGAGACTGTGAAC 507 253 576 Antisense
GAACGGCGTCAAGTGGCCAGCATGC 275 349 597 Antisense
GCCAACTCCAAAGTGTGTCGACTCC 74 279 636 Antisense
ACTCCTGCACTTCCAAGAACAACTA 453 95 656 Antisense
ATAAGCACTTTGGATCTACCGCCTA 601 23 701 Antisense
GAACGGACCAATCGAGGTTGCCTTC 340 345 771 Antisense
TGGAATCGAGCACTCGGCTGTTGCC 185 545 993 Antisense
Sequence Source Affymetrix Proprietary Database