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[191886_s_at] 3-oxoacid CoA-transferase

Description C05C10.3 /REP_DB=WormBase Gene ID /WP=CE01467 /TR=SW:Q09450 /GB=CAA88202.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=3-oxoacid CoA-transferase
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 33      6grp_total > 45      4grp_total > 56      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 956
1 2 3 4 range
A 2100.1
(-0.7)
P 		1791.2
(-3)
P 		2597.2
(3)
P 		1892.8
(-2.2)
P 		806
B 2132.6
(-2.7)
P 		2098.5
(-3)
P 		2741.6
(3)
P 		2097.8
(-3)
P 		644
C 2460.9
(0.6)
P 		2135.2
(-2.1)
P 		2747.2
(3)
P 		2028.5
(-3)
P 		719
avr 2231.2
(-1) 		2008.3
(-3) 		2695.3
(3) 		2006.4
(-3) 		689

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1456
1 2 3 4 5 6 range
A 1322.9
(-1.7)
P 		2014.9
(1.1)
P 		2466.3
(3)
P 		1564.5
(-0.7)
P 		1010.4
(-3)
P 		1734.8
(-0)
P 		1456
B 1500
(-1.2)
P 		2152.3
(3)
P 		2115.4
(2.8)
P 		1594.1
(-0.6)
P 		1230.7
(-3)
P 		1886.1
(1.3)
P 		922
C 1471.3
(-1.1)
P 		2278.8
(3)
P 		1941.3
(1.3)
P 		1251.4
(-2.2)
P 		1094.4
(-3)
P 		1730.7
(0.2)
P 		1184
avr 1431.4
(-1.2) 		2148.7
(2.9) 		2174.3
(3) 		1470
(-1) 		1111.8
(-3) 		1783.9
(0.8) 		1063
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 680
1 2 3 4 range
A 764.6
(3)
P 		388.8
(-1.6)
P 		679
(1.9)
P 		277.1
(-3)
P 		488
B 680.1
(3)
P 		518.3
(-1.2)
P 		635.3
(1.8)
P 		447
(-3)
P 		233
C 814.6
(1.6)
P 		613.9
(-0.3)
P 		957.5
(3)
P 		342
(-3)
P 		616
avr 753.1
(2.9) 		507
(-0.7) 		757.3
(3) 		355.4
(-3) 		402

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 243.9
(-3)
P 		716.6
(3)
P 		537.1
(0.7)
P 		396.8
(-1.1)
P 		304.9
(-2.2)
P 		422.4
(-0.7)
P 		473
B 521.9
(-1)
P 		716.4
(3)
P 		513.7
(-1.1)
P 		422.2
(-3)
P 		500
(-1.4)
P 		703.3
(2.7)
P 		294
C 545.3
(1)
P 		695.3
(3)
P 		494.1
(0.3)
P 		251.7
(-3)
P 		354.1
(-1.6)
P 		579.4
(1.4)
P 		444
avr 437
(-1.6) 		709.4
(3) 		515
(-0.3) 		356.9
(-3) 		386.3
(-2.5) 		568.4
(0.6) 		353
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191886_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3506
Sequence Type Exemplar sequence
Representative Public ID C05C10.3 NCBI
Target Description C05C10.3 /REP_DB=WormBase Gene ID /WP=CE01467 /TR=SW:Q09450 /GB=CAA88202.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=3-oxoacid CoA-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063743 NCBI Caenorhabditis elegans C05C10.3 (C05C10.3) mRNA, complete cds. 11/11 None
SNAP00000016013 ENSEMBL cdna:SNAP chromosome:CEL140:II:9934458:9936799:-1 11/11 None
GENEFINDER00000016023 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9934458:9936799:-1 11/11 None
C05C10.3.3 ENSEMBL cdna:known chromosome:CEL140:II:9934218:9936804:-1 gene:C05C10.3 11/11 None
C05C10.3.2 ENSEMBL cdna:known chromosome:CEL140:II:9934315:9936804:-1 gene:C05C10.3 11/11 None
C05C10.3.1 ENSEMBL cdna:known chromosome:CEL140:II:9934315:9936806:-1 gene:C05C10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9934454-9936796(-) 100.0 100.0
Public Domain and Genome References
Gene Title 3-oxoacid CoA-transferase
Ensembl C05C10.3
Entrez Gene 174548 Entrez gene
SwissProt Q09450 EMBL-EBI
WormBase CE01467 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16830.1.S1_AT similar to 3-oxoacid CoA transferase 1 cfa
CANINE_2:CFA.21053.1.S1_S_AT similar to 3-oxoacid CoA transferase 1 cfa
CANINE_2:CFAAFFX.28412.1.S1_AT similar to 3-oxoacid CoA transferase 1 cfa
CANINE_2:CFAAFFX.28412.1.S1_S_AT similar to 3-oxoacid CoA transferase 1 cfa
DROSOPHILA_2:1629939_A_AT dm
DROSGENOME1:151789_AT dm
CHICKEN:GGA.17826.1.S1_AT 3-oxoacid CoA transferase 1 gga
CHICKEN:GGA.4712.1.S1_A_AT 3-oxoacid CoA transferase 1 gga
CHICKEN:GGA.4712.2.S1_AT 3-oxoacid CoA transferase 1 gga
CHICKEN:GGAAFFX.13218.1.S1_S_AT 3-oxoacid CoA transferase 1 gga
HU35KSUBB:RC_AA227878_S_AT 3-oxoacid CoA transferase 1 hs
HUGENEFL:U62961_AT 3-oxoacid CoA transferase 1 hs
HG-U133A:202780_AT 3-oxoacid CoA transferase 1 hs
HG-U133_PLUS_2:202780_AT 3-oxoacid CoA transferase 1 hs
HG-FOCUS:202780_AT 3-oxoacid CoA transferase 1 hs
HG-U133A_2:202780_AT 3-oxoacid CoA transferase 1 hs
U133_X3P:G4557816_3P_AT 3-oxoacid CoA transferase 1 hs
HG-U95AV2:41142_AT 3-oxoacid CoA transferase 1 hs
HG-U133_PLUS_2:244134_AT 3-oxoacid CoA transferase 1 hs
HG-U133B:244134_AT 3-oxoacid CoA transferase 1 hs
HG-U95E:74542_I_AT 3-oxoacid CoA transferase 1 hs
HG-U95E:74545_R_AT 3-oxoacid CoA transferase 1 hs
U133_X3P:HS.130160.0.S1_3P_AT 3-oxoacid CoA transferase 1 hs
MG-U74AV2:92845_AT 3-oxoacid CoA transferase 1 mm
MOE430A:1455804_X_AT 3-oxoacid CoA transferase 1 mm
MOUSE430A_2:1455804_X_AT 3-oxoacid CoA transferase 1 mm
MOUSE430_2:1455804_X_AT 3-oxoacid CoA transferase 1 mm
MOE430A:1428140_AT 3-oxoacid CoA transferase 1 mm
MOUSE430A_2:1428140_AT 3-oxoacid CoA transferase 1 mm
MOUSE430_2:1428140_AT 3-oxoacid CoA transferase 1 mm
MOE430A:1436750_A_AT 3-oxoacid CoA transferase 1 mm
MOUSE430A_2:1436750_A_AT 3-oxoacid CoA transferase 1 mm
MOUSE430_2:1436750_A_AT 3-oxoacid CoA transferase 1 mm
MOE430A:1449059_A_AT 3-oxoacid CoA transferase 1 mm
MOUSE430A_2:1449059_A_AT 3-oxoacid CoA transferase 1 mm
MOUSE430_2:1449059_A_AT 3-oxoacid CoA transferase 1 mm
MG-U74BV2:105564_AT Scot mm
MOE430B:1444682_AT Scot mm
MOUSE430_2:1444682_AT Scot mm
MU19KSUBA:TC18674_AT Scot mm
MU19KSUBB:TC31380_AT Scot mm
MU19KSUBB:TC31380_G_AT Scot mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8410 CoA-transferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88202 Hypothetical protein C05C10.3 [Caenorhabditis elegans] ref|NP_496144.1| C05C10.3 [Caenorhabditis elegans] sp|Q09450|SCOT_CAEEL Probable succinyl-CoA:3-ketoacid-coenzyme A transferase, mitochondrial precursor (3-oxoacid CoA-transferase) 0.0
blast CAE57918 Hypothetical protein CBG00970 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004165 EMBL-EBI Coenzyme A transferase 3.6E-109
Pfam IPR004165 EMBL-EBI Coenzyme A transferase 7.0E-65
Sequence
Target Sequence 
>C. ELEGANS:191886_S_AT
gtatcgggattccgactttggcgccaaattatataccaaatggatttactgttcatttgc
aaagtgagaatggtattattggagtgggaccatatccaagaaaaggaacagaagacgccg
atctcattaatgctggaaaagagccaattactcttctcaaaggagcttcaattgttggtt
ctgatgaatcattcgcaatgattcgtggttctcatatggatattactgtgctcggtgcac
ttcagtgctcacagtttggagatttagcgaattggatgattccgggaaaattggtgaaag
gaatgggcggtgcaatggatcttgtctctgctcccggagcccgtgtgatcgttgtaatgg
agcatgtatcgaagaacggagagccaaaaattctagagcactgcgaacttcctctgaccg
gcaaaggagtaatttcccgaatcattactgatatggcagttttcgacgtggacacaaaga
acggattgacattgatcgaagtcaggaaggatcttactgtagatgatatcaagaaactca
ccgcttgcaaattcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCGGGATTCCGACTTTGGCGCC 470 453 971 Antisense
GAAGACGCCGATCTCATTAATGCTG 113 339 1081 Antisense
CATTCGCAATGATTCGTGGTTCTCA 264 217 1160 Antisense
TATGGATATTACTGTGCTCGGTGCA 264 655 1185 Antisense
TGCTCGGTGCACTTCAGTGCTCACA 546 581 1199 Antisense
GTGCAATGGATCTTGTCTCTGCTCC 511 481 1280 Antisense
CGGAGCCCGTGTGATCGTTGTAATG 637 241 1305 Antisense
ATTCTAGAGCACTGCGAACTTCCTC 650 9 1360 Antisense
GAACTTCCTCTGACCGGCAAAGGAG 646 349 1375 Antisense
GATATGGCAGTTTTCGACGTGGACA 87 425 1420 Antisense
GAAACTCACCGCTTGCAAATTCGAA 636 355 1503 Antisense
Sequence Source Affymetrix Proprietary Database