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[191882_at] UDP-glucuronosyltransferase

Description F47C10.6 /REP_DB=WormBase Gene ID /WP=CE10664 /TR=O01558 /GB=AAB52270.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_total > 17      4grp_total > 39      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 222
(3)
A 		146.2
(-0.8)
A 		100.9
(-3)
A 		170.2
(0.4)
A 		121
B 192.1
(3)
A 		123.7
(-1.5)
A 		119.3
(-1.8)
A 		101.2
(-3)
A 		91
C 200.9
(3)
A 		90.9
(-3)
A 		116.8
(-1.6)
A 		165
(1)
A 		110
avr 205
(3) 		120.3
(-2.5) 		112.3
(-3) 		145.5
(-0.9) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 355.4
(3)
A 		169.8
(-1.1)
A 		124.6
(-2)
A 		121.8
(-2.1)
A 		116.1
(-2.2)
A 		81
(-3)
A 		274
B 444
(3)
P 		196.1
(-0.7)
A 		142
(-1.5)
A 		37.3
(-3)
A 		115.4
(-1.8)
A 		93.2
(-2.2)
A 		407
C 285.4
(3)
P 		192.2
(0.3)
A 		103.2
(-2.3)
A 		139.7
(-1.2)
A 		79.2
(-3)
A 		99.3
(-2.4)
A 		206
avr 361.6
(3) 		186
(-0.9) 		123.3
(-2.3) 		99.6
(-2.8) 		103.6
(-2.7) 		91.2
(-3) 		270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 80.8
(3)
A 		31.7
(-2.3)
A 		26.4
(-2.8)
A 		24.9
(-3)
A 		56
B 61.3
(3)
A 		30.5
(-1.7)
A 		27.6
(-2.1)
A 		21.6
(-3)
A 		40
C 66.5
(3)
A 		26.1
(-3)
A 		40.7
(-0.8)
A 		27.8
(-2.7)
A 		40
avr 69.5
(3) 		29.4
(-2.4) 		31.6
(-2.1) 		24.8
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 65.5
(3)
A 		60.4
(2.3)
A 		27.1
(-2)
A 		30.9
(-1.5)
A 		35
(-1)
A 		19.7
(-3)
A 		46
B 154.5
(3)
P 		65.3
(-0.7)
A 		34.5
(-2)
A 		9.9
(-3)
A 		46.9
(-1.5)
A 		34.7
(-2)
A 		145
C 105.8
(3)
P 		58.6
(-0.5)
A 		26.3
(-2.9)
A 		28.1
(-2.8)
A 		25.6
(-3)
A 		33.2
(-2.4)
A 		80
avr 108.6
(3) 		61.4
(-0.3) 		29.3
(-2.6) 		23
(-3) 		35.8
(-2.1) 		29.2
(-2.6) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191882_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15659
Sequence Type Exemplar sequence
Representative Public ID F47C10.6 NCBI
Target Description F47C10.6 /REP_DB=WormBase Gene ID /WP=CE10664 /TR=O01558 /GB=AAB52270.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071659(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071659 NCBI Caenorhabditis elegans F47C10.6 (UDP-glucuronosyltransferase) mRNA, complete cds. 10/11 None
SNAP00000021954 ENSEMBL cdna:SNAP chromosome:CEL140:V:3841144:3843712:-1 9/11 None
GENEFINDER00000021962 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3840275:3845933:-1 9/11 None
F47C10.6 ENSEMBL cdna:known chromosome:CEL140:V:3841672:3843820:-1 gene:F47C10.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3841671-3843820(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-32
Ensembl F47C10.6
Entrez Gene 185911 Entrez gene
SwissProt O01558 EMBL-EBI
WormBase CE29803 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52270 Udp-glucuronosyltransferase protein 32 [Caenorhabditis elegans] ref|NP_504060.2| F47C10.6 [Caenorhabditis elegans] 0.0
blast CAE71586 Hypothetical protein CBG18543 [Caenorhabditis briggsae] 0.0
blast CAE62451 Hypothetical protein CBG06543 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.8E-5
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.7E-11
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.7E-11
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.1E-43
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 6.3E-6
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.8E-5
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.7E-11
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504060.2 1 499-518
F47C10.6 1 499-518
SNAP00000021954 1 468-490
GENEFINDER00000021962 1 789-811
Sequence
Target Sequence 
>C. ELEGANS:191882_AT
cctcacagcattcctgacacatggcggattgggtagcacaaatgaagctgcattccttgg
gaaaccgagtgttatggagtgcaatattacattggcgttaaattatagtttagtgcagtt
tgaaacatttgaaaatgaaaaaaaaaacagacacacaactgcctacctagggcaggctca
tcaaaaaatattccagttccctatattcgctgatcaatcacgtaatagcaatatgctggg
ccgccaggaaatgtcgatagttctgcataaaagtgatctcggaaacttccaaaaaatccg
tgacgctttccatgaaattcttcacaacgaaaaatatcatctaaatgctcgaaaagtggc
cgatatggtcagaaatcagccagccaagccaagagatatttttgtgaagcatgtcgaatt
cgtgggaagattcggcccacttcatcatatgactccgtacagcctgaaaatgccatttta
tcaaagatatcattatgacatttttatattcaaatttctgacaaactactttattcccgt
tgtattcttgttatgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCACAGCATTCCTGACACATGGC 708 267 1113 Antisense
GACACATGGCGGATTGGGTAGCACA 286 365 1128 Antisense
GAAGCTGCATTCCTTGGGAAACCGA 591 341 1156 Antisense
GACACACAACTGCCTACCTAGGGCA 309 367 1262 Antisense
ATTCCAGTTCCCTATATTCGCTGAT 674 7 1302 Antisense
GGGCCGCCAGGAAATGTCGATAGTT 85 491 1350 Antisense
AAAAAATCCGTGACGCTTTCCATGA 610 129 1403 Antisense
GAAATCAGCCAGCCAAGCCAAGAGA 378 363 1484 Antisense
GTGGGAAGATTCGGCCCACTTCATC 341 489 1534 Antisense
CTGACAAACTACTTTATTCCCGTTG 95 237 1630 Antisense
ATTCCCGTTGTATTCTTGTTATGTG 386 9 1645 Antisense
Sequence Source Affymetrix Proprietary Database