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[191881_at] Ser/Thr protein phosphatases

Description F35E12.3 /REP_DB=WormBase Gene ID /WP=CE09918 /TR=O02356 /GB=CAB04271.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ser-Thr protein phosphatases
Cluster 6grp_total > 0      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 16.5
(-2.2)
A 		58.3
(1.2)
A 		6.5
(-3)
A 		81.1
(3)
P 		75
B 26.1
(3)
P 		23.8
(2.3)
A 		6.2
(-3)
A 		22.2
(1.8)
A 		20
C 5.2
(-3)
A 		45.3
(3)
A 		11.7
(-2)
A 		41.9
(2.5)
A 		40
avr 15.9
(-1.8) 		42.5
(2.1) 		8.1
(-3) 		48.4
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 3.4
(-2.9)
A 		37.3
(1.8)
A 		45.8
(3)
A 		3
(-3)
A 		31.8
(1)
A 		16.4
(-1.1)
A 		43
B 16.8
(-1.2)
A 		36.5
(1.1)
A 		52.3
(3)
A 		1.2
(-3)
A 		37.2
(1.2)
A 		33.3
(0.8)
A 		51
C 15.9
(-3)
A 		47.6
(1.5)
P 		19.7
(-2.5)
A 		23.3
(-1.9)
A 		46.4
(1.4)
M 		57.9
(3)
A 		42
avr 12
(-2.5) 		40.5
(3) 		39.3
(2.8) 		9.2
(-3) 		38.5
(2.6) 		35.9
(2.1) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6
(-0.6)
A 		12.6
(3)
A 		1.7
(-3)
A 		11.9
(2.6)
P 		11
B 8.3
(3)
P 		5.9
(0.9)
A 		1.4
(-3)
A 		4.7
(-0.1)
A 		7
C 1.7
(-3)
A 		13
(3)
A 		4.1
(-1.7)
A 		7.1
(-0.1)
A 		11
avr 5.3
(-0.9) 		10.5
(3) 		2.4
(-3) 		7.9
(1.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.6
(-3)
A 		13.3
(3)
A 		10
(1.4)
A 		0.8
(-2.9)
A 		9.6
(1.3)
A 		4
(-1.4)
A 		13
B 5.8
(-0.8)
A 		12.2
(1.8)
A 		12.7
(2)
A 		0.3
(-3)
A 		15.1
(3)
A 		12.4
(1.9)
A 		15
C 5.9
(-2.5)
A 		14.5
(1)
P 		5
(-2.9)
A 		4.7
(-3)
A 		15
(1.2)
M 		19.4
(3)
A 		15
avr 4.1
(-1.8) 		13.3
(3) 		9.2
(0.8) 		1.9
(-3) 		13.2
(2.9) 		11.9
(2.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12736
Sequence Type Exemplar sequence
Representative Public ID F35E12.3 NCBI
Target Description F35E12.3 /REP_DB=WormBase Gene ID /WP=CE09918 /TR=O02356 /GB=CAB04271.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ser-Thr protein phosphatases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073997 NCBI Caenorhabditis elegans F35E12.3 (F35E12.3) mRNA, complete cds. 11/11 None
SNAP00000032228 ENSEMBL cdna:SNAP chromosome:CEL140:V:13728163:13729498:1 11/11 None
GENEFINDER00000032238 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13727096:13729498:1 11/11 None
F35E12.3 ENSEMBL cdna:known chromosome:CEL140:V:13728495:13729498:1 gene:F35E12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13728494-13729498(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ser/Thr protein phosphatases
Ensembl F35E12.3
Entrez Gene 185305 Entrez gene
SwissProt O02356 EMBL-EBI
WormBase CE09918 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04271 Hypothetical protein F35E12.3 [Caenorhabditis elegans] ref|NP_506398.1| F35E12.3 [Caenorhabditis elegans] 1.0E-167
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 9.0E-38
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 1.0E-37
blast AAB70960 Hypothetical protein C08E3.7 [Caenorhabditis elegans] ref|NP_494012.1| C08E3.7 [Caenorhabditis elegans] 8.0E-36
blast AAB70960 Hypothetical protein C08E3.7 [Caenorhabditis elegans] ref|NP_494012.1| C08E3.7 [Caenorhabditis elegans] 1.0E-35
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-34
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-34
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.8E-7
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-34
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.8E-7
Sequence
Target Sequence 
>C. ELEGANS:191881_AT
ggaccaattttccgagaatctcaagtggttgtttcaaaatagaaaaatttcattgaacaa
attcaagttggttattcctgacgacgatgatgaggagtcccgcaagaaatatatggactg
cgttgtggaagctctgagatcggcggaaaatttgagttcaaggaatgtaaaaacttcttg
tctttcgtcggcagaaatttcacaaatattgcctatcttccctgcaaaaaatctggaata
cattgaattctttgaatgcgactttgctggatatgagcagctggtccatttggagcaatg
gaagaaagctgaacgatgtattaaatgttccgaattgaatattccgatggagttcttctt
gcagttcaagcgtgttaaagttgatattgagccaggagaggatccaactgtaattcgtga
tgtgatcgataattccaacaatctcgaaagtgttttgattcagtgttgctcaatgaacat
caattatatcaatgaagtcgtcagtgtctttaatttgaaggaagattcaatgtatcttac
tccaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCAATTTTCCGAGAATCTCAAG 177 521 300 Antisense
CAAGTTGGTTATTCCTGACGACGAT 315 183 363 Antisense
GACGATGATGAGGAGTCCCGCAAGA 661 375 382 Antisense
TGGACTGCGTTGTGGAAGCTCTGAG 559 547 413 Antisense
ACTTCTTGTCTTTCGTCGGCAGAAA 532 103 472 Antisense
ACAAATATTGCCTATCTTCCCTGCA 667 111 501 Antisense
GAATTCTTTGAATGCGACTTTGCTG 238 325 544 Antisense
ATGAGCAGCTGGTCCATTTGGAGCA 520 45 572 Antisense
TCCGATGGAGTTCTTCTTGCAGTTC 664 593 642 Antisense
GGAGAGGATCCAACTGTAATTCGTG 94 515 694 Antisense
GATTCAATGTATCTTACTCCAAACA 279 431 823 Antisense
Sequence Source Affymetrix Proprietary Database