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[191880_at] carnitine octanoyltransferase

Description F41E7.6 /REP_DB=WormBase Gene ID /WP=CE03306 /TR=Q20278 /GB=CAA92129.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=carnitine octanoyltransferase
Cluster 6grp_total > 54      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2.4
(-3)
A 		17.6
(-0.2)
A 		4.1
(-2.7)
A 		34.5
(3)
A 		32
B 15.9
(0.1)
A 		29.3
(3)
A 		1.4
(-3)
A 		3.5
(-2.5)
A 		28
C 18.6
(2.1)
A 		21.2
(3)
A 		8.4
(-1.5)
A 		4
(-3)
A 		17
avr 12.3
(-0.4) 		22.7
(3) 		4.6
(-3) 		14
(0.1) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 4.1
(-3)
A 		4.6
(-2.9)
A 		33.4
(3)
A 		14.2
(-0.9)
A 		9.5
(-1.9)
A 		28.5
(2)
A 		29
B 19
(-0.7)
A 		5.1
(-3)
A 		41
(3)
A 		6.2
(-2.8)
A 		14.2
(-1.5)
A 		16.7
(-1.1)
A 		36
C 26.4
(3)
A 		10.6
(-0.8)
A 		1.5
(-3)
A 		14.9
(0.2)
A 		3
(-2.6)
A 		2.5
(-2.8)
A 		25
avr 16.5
(0.1) 		6.8
(-3) 		25.3
(3) 		11.8
(-1.4) 		8.9
(-2.3) 		15.9
(-0) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.9
(-3)
A 		3.8
(1.1)
A 		1.1
(-2.7)
A 		5.1
(3)
A 		4
B 5.1
(1.2)
A 		7.2
(3)
A 		0.3
(-3)
A 		0.7
(-2.7)
A 		7
C 6.1
(3)
A 		6.1
(3)
A 		2.9
(-0.6)
A 		0.7
(-3)
A 		5
avr 4
(0.6) 		5.7
(3) 		1.4
(-3) 		2.2
(-1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.6
(-2.3)
A 		7.3
(3)
A 		3.6
(-0.4)
A 		2.9
(-1.1)
A 		6.9
(2.6)
A 		7
B 6.6
(0.6)
A 		1.7
(-2.9)
A 		9.9
(3)
A 		1.6
(-3)
A 		5.8
(0)
A 		6.2
(0.3)
A 		8
C 9.8
(3)
A 		3.2
(-1.2)
A 		0.4
(-3)
A 		3
(-1.3)
A 		1
(-2.6)
A 		0.8
(-2.7)
A 		9
avr 5.7
(2.7) 		2.2
(-3) 		5.9
(3) 		2.7
(-2.2) 		3.2
(-1.4) 		4.6
(0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17251
Sequence Type Exemplar sequence
Representative Public ID F41E7.6 NCBI
Target Description F41E7.6 /REP_DB=WormBase Gene ID /WP=CE03306 /TR=Q20278 /GB=CAA92129.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=carnitine octanoyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077328 NCBI Caenorhabditis elegans F41E7.6 (F41E7.6) mRNA, complete cds. 11/11 None
SNAP00000016493 ENSEMBL cdna:SNAP chromosome:CEL140:X:10307065:10308247:-1 10/11 None
GENEFINDER00000016496 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10307065:10310394:-1 10/11 None
F41E7.6 ENSEMBL cdna:known chromosome:CEL140:X:10307065:10310394:-1 gene:F41E7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10307064-10310394(-) 100.0 100.0
Public Domain and Genome References
Gene Title carnitine octanoyltransferase
Ensembl F41E7.6
Entrez Gene 185624 Entrez gene
SwissProt Q20278 EMBL-EBI
WormBase CE03306 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92129 Hypothetical protein F41E7.6 [Caenorhabditis elegans] ref|NP_509729.1| F41E7.6 [Caenorhabditis elegans] 0.0
blast CAE70558 Hypothetical protein CBG17205 [Caenorhabditis briggsae] 0.0
blast CAB04738 Hypothetical protein T20B3.1 [Caenorhabditis elegans] ref|NP_507245.1| T20B3.1 [Caenorhabditis elegans] 2.0E-94
blast CAA92129 Hypothetical protein F41E7.6 [Caenorhabditis elegans] ref|NP_509729.1| F41E7.6 [Caenorhabditis elegans] 6.0E-83
blast CAB04738 Hypothetical protein T20B3.1 [Caenorhabditis elegans] ref|NP_507245.1| T20B3.1 [Caenorhabditis elegans] 2.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 5.8E-81
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.6E-59
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 6.5E-12
Sequence
Target Sequence 
>C. ELEGANS:191880_AT
gctccaacatacgaaactgcttctacgcgaatgttttatcatggaagaacggaaacagtc
cgaagtttaacaactgatatggaaaaatatttaaccgcttgtgaaaattcagccacaaat
gaaaccttaaaacttctattctttgacgcgtataactcacacaatacgttgatggatgct
gctcgagaaggaaaaggaatagatcgacatttctatggtttgagaaaggcacaaactgcg
attcagtcatatggaaaatcagtagaaattccatttctggatcacaaatcgtttagtgcc
agcggtggaaatgggaactttttgttgtcaacaagctttacattcaccatctccaattgg
cttgatgatgctacaaacggggacgaattccgtgaaaaccttgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCAACATACGAAACTGCTTCTA 7 299 1237 Antisense
ACTGCTTCTACGCGAATGTTTTATC 24 99 1252 Antisense
AACTTCTATTCTTTGACGCGTATAA 375 139 1367 Antisense
CTTTGACGCGTATAACTCACACAAT 162 221 1377 Antisense
ATACGTTGATGGATGCTGCTCGAGA 485 23 1400 Antisense
AAGGCACAAACTGCGATTCAGTCAT 369 161 1462 Antisense
CAAATCGTTTAGTGCCAGCGGTGGA 583 191 1521 Antisense
GTCAACAAGCTTTACATTCACCATC 166 465 1563 Antisense
ATTCACCATCTCCAATTGGCTTGAT 475 11 1578 Antisense
GATGATGCTACAAACGGGGACGAAT 519 409 1600 Antisense
GACGAATTCCGTGAAAACCTTGAGT 192 375 1618 Antisense
Sequence Source Affymetrix Proprietary Database