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[191878_at] glutathione S-transferase

Description Y71F9AL.5 /REP_DB=WormBase Gene ID /WP=CE25559 /TR=Q9N4H6 /GB=AAF36004.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=glutathione S-transferases
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 42      6grp_total > 41      4grp_total > 61      6grp_highest_sub > 03_04      6grp_cgc > 60      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 704
1 2 3 4 range
A 1040.1
(3)
P 		1025.3
(2.6)
P 		1040.6
(3)
P 		804.9
(-3)
P 		236
B 1136.7
(1.4)
P 		1067.2
(0.8)
P 		1325.2
(3)
P 		627.4
(-3)
P 		698
C 1232.9
(3)
P 		1136.4
(2.1)
P 		956.4
(0.3)
P 		621.1
(-3)
P 		612
avr 1136.6
(3) 		1076.3
(2.2) 		1107.4
(2.6) 		684.5
(-3) 		452

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 750
1 2 3 4 5 6 range
A 1204.7
(1.6)
P 		998.3
(-0.5)
P 		1345.7
(3)
P 		1125.8
(0.8)
P 		777.6
(-2.7)
P 		750.4
(-3)
P 		595
B 976.8
(1.4)
P 		969.1
(1.3)
P 		1073.5
(2.5)
P 		1112.7
(3)
P 		738
(-1.4)
P 		596.6
(-3)
P 		516
C 877.3
(-0)
P 		862.7
(-0.2)
P 		1022.1
(1.5)
P 		1163.7
(3)
P 		716.6
(-1.7)
P 		596.2
(-3)
P 		568
avr 1019.6
(1.5) 		943.4
(0.6) 		1147.1
(3) 		1134.1
(2.8) 		744.1
(-1.8) 		647.7
(-3) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 378.7
(3)
P 		222.6
(-0.6)
P 		272
(0.5)
P 		117.8
(-3)
P 		261
B 362.5
(3)
P 		263.6
(0.4)
P 		307.1
(1.5)
P 		133.7
(-3)
P 		229
C 408.1
(3)
P 		326.7
(1.4)
P 		333.3
(1.5)
P 		104.7
(-3)
P 		303
avr 383.1
(3) 		271
(0.5) 		304.1
(1.2) 		118.7
(-3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 222.1
(-1.6)
P 		355
(3)
P 		293.1
(0.8)
P 		285.5
(0.6)
P 		234.7
(-1.2)
P 		182.7
(-3)
P 		172
B 339.9
(3)
P 		322.6
(2.1)
P 		260.7
(-1)
P 		294.7
(0.7)
P 		299.9
(1)
P 		222.5
(-3)
P 		117
C 325.2
(3)
P 		263.2
(0)
P 		260.1
(-0.1)
P 		234
(-1.4)
P 		231.9
(-1.5)
P 		199.6
(-3)
P 		126
avr 295.7
(2) 		313.6
(3) 		271.3
(0.7) 		271.4
(0.7) 		255.5
(-0.1) 		201.6
(-3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191878_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.266
Sequence Type Exemplar sequence
Representative Public ID Y71F9AL.5 NCBI
Target Description Y71F9AL.5 /REP_DB=WormBase Gene ID /WP=CE25559 /TR=Q9N4H6 /GB=AAF36004.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=glutathione S-transferases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058669 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-43) (gst-43) mRNA, complete cds. 11/11 None
GENEFINDER00000005906 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2901342:2902975:1 10/11 None
Y71F9AL.5 ENSEMBL cdna:known chromosome:CEL140:I:2901342:2902975:1 gene:Y71F9AL.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005893 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2901341-2902975(+) 98.14 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-43
Ensembl Y71F9AL.5
Entrez Gene 190586 Entrez gene
SwissProt Q9N4H6 EMBL-EBI
WormBase CE25559 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6306 DNA methylation inferred from electronic annotation QuickGO AmiGO
9072 aromatic amino acid family metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
8170 N-methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36004 Glutathione s-transferase protein 43 [Caenorhabditis elegans] ref|NP_491070.1| Glutathione S-Transferase family member (gst-43) [Caenorhabditis elegans] 1.0E-122
blast AAF36004 Glutathione s-transferase protein 43 [Caenorhabditis elegans] ref|NP_491070.1| Glutathione S-Transferase family member (gst-43) [Caenorhabditis elegans] 1.0E-117
blast AAF60754 Hypothetical protein Y53G8B.1 [Caenorhabditis elegans] ref|NP_497662.1| Y53G8B.1 [Caenorhabditis elegans] 3.0E-73
blast AAF60754 Hypothetical protein Y53G8B.1 [Caenorhabditis elegans] ref|NP_497662.1| Y53G8B.1 [Caenorhabditis elegans] 1.0E-67
blast CAA91449 Hypothetical protein D1053.1 [Caenorhabditis elegans] ref|NP_509962.1| Glutathione S-Transferase family member (gst-42) [Caenorhabditis elegans] sp|Q18938|MAAI_CAEEL Probable maleylacetoacetate isomerase (MAAI) 3.0E-65
blast CAA91449 Hypothetical protein D1053.1 [Caenorhabditis elegans] ref|NP_509962.1| Glutathione S-Transferase family member (gst-42) [Caenorhabditis elegans] sp|Q18938|MAAI_CAEEL Probable maleylacetoacetate isomerase (MAAI) 5.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 4.6E-7
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 2.7E-24
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 4.6E-7
Sequence
Target Sequence 
>C. ELEGANS:191878_AT
attcatattggcgttcgtcgtgtgcctggagagttcgcatcgcacttgctctgaaaaata
tcgactacgaataccggccaatcgacttattttctgaagaatccaagaacaatgcagagt
tcgtcaagcacaacccagcgaaaaaagttccaactttagtgataaatggcttatcactga
cagaaagcttggcaataatcgaatatttggatgaagcctatccggatcctccgttccttc
caaaagaattggataagagatcgtattcaagagctatcgcacttcatatagtcgcaagta
ttcagccacttcaagcaatcaatatccacaaaatgctcaatgaaaaggagccgggatacg
gtgacttttggtgcaatcactttgtgaacaagggattcttagctctcgaagaacttttga
agaagcattctgggaaatattgtgttggagatcagcttacaattgctgatatcaacttgc
catcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCATATTGGCGTTCGTCGTGTGC 687 11 32 Antisense
TTCGTCGTGTGCCTGGAGAGTTCGC 569 695 45 Antisense
TTCGCATCGCACTTGCTCTGAAAAA 192 697 65 Antisense
GAATACCGGCCAATCGACTTATTTT 373 325 100 Antisense
TGCAGAGTTCGTCAAGCACAACCCA 290 577 144 Antisense
TTGGATGAAGCCTATCCGGATCCTC 387 709 238 Antisense
TCCTCCGTTCCTTCCAAAAGAATTG 343 593 258 Antisense
GAGCTATCGCACTTCATATAGTCGC 520 387 302 Antisense
GTATTCAGCCACTTCAAGCAATCAA 463 453 329 Antisense
GCCGGGATACGGTGACTTTTGGTGC 530 279 381 Antisense
ATTGCTGATATCAACTTGCCATCGA 706 5 493 Antisense
Sequence Source Affymetrix Proprietary Database