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[191876_s_at] protein tyrosine phosphatase

Description F20B6.1 /REP_DB=WormBase Gene ID /WP=CE04423 /TR=Q19629 /GB=AAA82310.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster 6grp_total > 77      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 39.7
(-3)
A 		92.5
(-0.6)
A 		41.8
(-2.9)
A 		173.4
(3)
A 		134
B 12.7
(-3)
A 		57
(-1.2)
A 		25.1
(-2.5)
A 		162.6
(3)
A 		150
C 60.8
(-1.7)
A 		96.3
(0.3)
A 		36
(-3)
A 		147.1
(3)
A 		111
avr 37.7
(-2.8) 		81.9
(-0.7) 		34.3
(-3) 		161
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 39.2
(-3)
A 		42.6
(-2.9)
A 		63.2
(-2)
A 		87.2
(-1)
A 		75.6
(-1.5)
A 		184.5
(3)
A 		145
B 117.9
(-0.2)
A 		62
(-3)
A 		64.1
(-2.9)
A 		99.8
(-1.1)
A 		106.1
(-0.8)
A 		181.8
(3)
A 		120
C 80.2
(-1.7)
A 		66.8
(-3)
A 		75.4
(-2.2)
A 		94.5
(-0.4)
A 		89.1
(-0.9)
A 		130.2
(3)
A 		63
avr 79.1
(-1.8) 		57.1
(-3) 		67.6
(-2.4) 		93.8
(-1) 		90.3
(-1.2) 		165.5
(3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 14.5
(-1.5)
A 		20.1
(0.8)
A 		10.9
(-3)
A 		25.4
(3)
A 		15
B 4
(-3)
A 		14.1
(-1)
A 		5.8
(-2.6)
A 		34.7
(3)
A 		31
C 20.1
(-0)
A 		27.7
(3)
A 		12.6
(-3)
A 		24.8
(1.8)
A 		15
avr 12.9
(-2) 		20.6
(0.5) 		9.8
(-3) 		28.3
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 7.2
(-3)
A 		15.2
(-1.7)
A 		13.8
(-1.9)
A 		22.1
(-0.6)
A 		22.8
(-0.5)
A 		44.9
(3)
A 		38
B 41
(-0.1)
A 		20.6
(-2.4)
A 		15.6
(-3)
A 		26.4
(-1.8)
A 		43.1
(0.2)
A 		67.8
(3)
A 		52
C 29.7
(-0.4)
A 		20.4
(-2.7)
A 		19.2
(-3)
A 		19
(-3)
A 		28.8
(-0.6)
A 		43.6
(3)
A 		25
avr 26
(-1.4) 		18.7
(-2.6) 		16.2
(-3) 		22.5
(-1.9) 		31.6
(-0.4) 		52.1
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191876_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16948
Sequence Type Exemplar sequence
Representative Public ID F20B6.1 NCBI
Target Description F20B6.1 /REP_DB=WormBase Gene ID /WP=CE04423 /TR=Q19629 /GB=AAA82310.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058670(11), NM_076313(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058670 NCBI Caenorhabditis elegans Y71F9AL.4 (Y71F9AL.4) mRNA, complete cds. 11/11 A 
NM_076313 NCBI Caenorhabditis elegans F20B6.1 (F20B6.1) mRNA, complete cds. 11/11 None
SNAP00000005893 ENSEMBL cdna:SNAP chromosome:CEL140:I:2890831:2907710:1 11/11 None
GENEFINDER00000005900 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2903460:2907710:1 11/11 None
SNAP00000010536 ENSEMBL cdna:SNAP chromosome:CEL140:X:4200322:4202834:1 11/11 None
GENEFINDER00000010543 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4200325:4201565:1 11/11 None
Y71F9AL.4 ENSEMBL cdna:known chromosome:CEL140:I:2903597:2907715:1 gene:Y71F9AL.4 11/11 A 
F20B6.1 ENSEMBL cdna:known chromosome:CEL140:X:4200325:4201524:1 gene:F20B6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4200325-4201525(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein tyrosine phosphatase
protein-tyrosine phosphatase
Ensembl Y71F9AL.4
F20B6.1
Entrez Gene 171861 Entrez gene
184712 Entrez gene
SwissProt Q19629 EMBL-EBI
Q9N4H5 EMBL-EBI
WormBase CE04423 Wormbase
CE25558 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36005 Hypothetical protein Y71F9AL.4 [Caenorhabditis elegans] ref|NP_491071.1| Y71F9AL.4 [Caenorhabditis elegans] 0.0
blast AAA82310 Hypothetical protein F20B6.1 [Caenorhabditis elegans] ref|NP_508714.1| F20B6.1 [Caenorhabditis elegans] 1.0E-91
blast AAA82310 Hypothetical protein F20B6.1 [Caenorhabditis elegans] ref|NP_508714.1| F20B6.1 [Caenorhabditis elegans] 4.0E-87
blast AAF36004 Glutathione s-transferase protein 43 [Caenorhabditis elegans] ref|NP_491070.1| Glutathione S-Transferase family member (gst-43) [Caenorhabditis elegans] 1.0E-83
blast AAA82310 Hypothetical protein F20B6.1 [Caenorhabditis elegans] ref|NP_508714.1| F20B6.1 [Caenorhabditis elegans] 5.0E-83
blast AAF36005 Hypothetical protein Y71F9AL.4 [Caenorhabditis elegans] ref|NP_491071.1| Y71F9AL.4 [Caenorhabditis elegans] 6.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.1E-25
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.5E-71
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 8.4E-6
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 8.8E-17
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.5E-71
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.5E-71
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.1E-25
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.4E-24
Sequence
Target Sequence 
>C. ELEGANS:191876_S_AT
ttgcactgagattgaaatcggcggaaaatcaaaggacaaaatcacccatcgagtgttgaa
agttgtggtgaaggcgaccggccaggaatctaaactaaaccactatcaatgggcttcttg
gccggaccatgggatgcccgattcgtgtgacacggcgcatcgtctcttgtcggctgtcaa
gaaggataagaagcccgtaattgctcactgctcggctggcgttggacgcaccgggacttt
ggtgttgatcgagtcgatgattgccgcactccggcatccgagaaagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCACTGAGATTGAAATCGGCGGA 395 703 147 Antisense
GGACAAAATCACCCATCGAGTGTTG 153 527 180 Antisense
TTGTGGTGAAGGCGACCGGCCAGGA 265 699 209 Antisense
ACCACTATCAATGGGCTTCTTGGCC 435 85 245 Antisense
CTTCTTGGCCGGACCATGGGATGCC 207 221 260 Antisense
GACCATGGGATGCCCGATTCGTGTG 56 385 271 Antisense
GGATGCCCGATTCGTGTGACACGGC 624 513 278 Antisense
TCGTCTCTTGTCGGCTGTCAAGAAG 622 603 306 Antisense
AAGAAGCCCGTAATTGCTCACTGCT 138 153 334 Antisense
ATCGAGTCGATGATTGCCGCACTCC 704 35 394 Antisense
CGCACTCCGGCATCCGAGAAAGCAG 182 255 411 Antisense
Sequence Source Affymetrix Proprietary Database