[Home] | [Total List]

[191875_at] glutathione S-transferase

Description K01D12.12 /REP_DB=WormBase Gene ID /WP=CE06051 /TR=Q18830 /GB=CAA99802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Glutathione S-transferases.
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 20      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 14      6grp_total > 33      4grp_total > 02      6grp_cgc > 81      6grp_cgc_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4063
1 2 3 4 range
A 2618.2
(-2.8)
P 		2468
(-3)
P 		2755.6
(-2.5)
P 		6118.5
(3)
P 		3651
B 2749.4
(-2.9)
P 		2777.4
(-2.8)
P 		2659.1
(-3)
P 		6531.1
(3)
P 		3872
C 2936.4
(-2.4)
P 		3018
(-2.3)
P 		2596.8
(-3)
P 		6226.2
(3)
P 		3629
avr 2768
(-2.8) 		2754.5
(-2.9) 		2670.5
(-3) 		6291.9
(3) 		3621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3211
1 2 3 4 5 6 range
A 4540
(1.1)
P 		3542.2
(-0.8)
P 		5513.3
(3)
P 		4191
(0.4)
P 		2420.6
(-3)
P 		2780.4
(-2.3)
P 		3093
B 4748
(2.1)
P 		3631.6
(-0.8)
P 		5122.7
(3)
P 		3550.8
(-1)
P 		2749.6
(-3)
P 		2915.1
(-2.6)
P 		2373
C 4589.3
(2.3)
P 		3808.3
(0.5)
P 		4875.7
(3)
P 		4378
(1.8)
P 		2302.2
(-3)
P 		3163.2
(-1)
P 		2574
avr 4625.8
(1.8) 		3660.7
(-0.4) 		5170.6
(3) 		4039.9
(0.5) 		2490.8
(-3) 		2952.9
(-2) 		2680
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 856
1 2 3 4 range
A 953.3
(3)
P 		535.7
(-3)
P 		720.4
(-0.3)
P 		895.6
(2.2)
P 		418
B 876.8
(-1)
P 		685.9
(-2.5)
P 		616.2
(-3)
P 		1391.8
(3)
P 		776
C 972
(0.4)
P 		867.7
(-3)
P 		905.1
(-1.8)
P 		1049.8
(3)
P 		182
avr 934
(0.4) 		696.4
(-3) 		747.2
(-2.3) 		1112.4
(3) 		416

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1024
1 2 3 4 5 6 range
A 836.9
(-1.4)
P 		1259.8
(3)
P 		1200.7
(2.4)
P 		1062.9
(1)
P 		730.4
(-2.4)
P 		676.9
(-3)
P 		583
B 1652.1
(3)
P 		1208.8
(-0.7)
P 		1243.9
(-0.4)
P 		940.5
(-3)
P 		1117.1
(-1.5)
P 		1087
(-1.8)
P 		712
C 1701.1
(3)
P 		1162
(-0.4)
P 		1241
(0.1)
P 		880.4
(-2.1)
P 		744.9
(-3)
P 		1058.9
(-1)
P 		956
avr 1396.7
(3) 		1210.2
(0.9) 		1228.5
(1.1) 		961.3
(-1.9) 		864.1
(-3) 		940.9
(-2.1) 		533
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191875_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14099
Sequence Type Exemplar sequence
Representative Public ID K01D12.12 NCBI
Target Description K01D12.12 /REP_DB=WormBase Gene ID /WP=CE06051 /TR=Q18830 /GB=CAA99802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Glutathione S-transferases.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073712(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073712 NCBI Caenorhabditis elegans CaDmium Responsive family member (cdr-6) (cdr-6) mRNA, complete cds. 11/11 None
SNAP00000038015 ENSEMBL cdna:SNAP chromosome:CEL140:V:12415161:12416286:-1 11/11 None
GENEFINDER00000038031 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12415161:12416286:-1 11/11 None
K01D12.12 ENSEMBL cdna:known chromosome:CEL140:V:12415094:12416287:-1 gene:K01D12.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12415160-12416286(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol cdr-6
Ensembl K01D12.12
Entrez Gene 179703 Entrez gene
SwissProt Q18830 EMBL-EBI
WormBase CE06051 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU43721 cadmium-inducible lysosomal protein CDR-6 [Caenorhabditis elegans] emb|CAA99802.1| Hypothetical protein K01D12.12 [Caenorhabditis elegans] ref|NP_506113.1| CaDmium Responsive family member (cdr-6) [Caenorhabditis elegans] 1.0E-140
blast CAE69635 Hypothetical protein CBG15876 [Caenorhabditis briggsae] 1.0E-123
blast CAE75479 Hypothetical protein CBG23482 [Caenorhabditis briggsae] 1.0E-122
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506113.1 1 2-21
K01D12.12 1 2-21
SNAP00000038015 1 2-21
GENEFINDER00000038031 1 2-21
Sequence
Target Sequence 
>C. ELEGANS:191875_AT
ggaactttaccttttatcgagctcaatggggaacacattgcagactctgatctcattgag
attcgcctgagacaacattttaagattccaagcctcccaaccgaacaagaagcgcagtca
gttgctttgagcagaatggcagataatcatcttttctatgtacttctccgctacaagagc
tcagttgacatgttttacgagatcattgtcgggcttctcggtttaccatcagcattcaac
gccgtattggttcctctggtcaaagctgtgtttggaagcaaagtttatagtcgttgtgtt
ggggcaattggagattttgagccacatgagcttgatgagcttcttcatagagatctcaaa
gtaattcaagactctatcaaagggaaattccttttcggagacaagatcacaccgactgat
gcaaccgtatttggacaattggcatccgtgtattacccacttcgttcgcatatcaacgac
gtgctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTTTACCTTTTATCGAGCTCA 531 529 283 Antisense
GGGGAACACATTGCAGACTCTGATC 117 499 310 Antisense
CATTTTAAGATTCCAAGCCTCCCAA 510 215 358 Antisense
GCCTCCCAACCGAACAAGAAGCGCA 619 281 374 Antisense
TCATCTTTTCTATGTACTTCTCCGC 385 621 429 Antisense
ACTTCTCCGCTACAAGAGCTCAGTT 459 103 444 Antisense
GCATTCAACGCCGTATTGGTTCCTC 355 305 514 Antisense
GTATTGGTTCCTCTGGTCAAAGCTG 571 323 526 Antisense
AGATCACACCGACTGATGCAACCGT 647 65 686 Antisense
AATTGGCATCCGTGTATTACCCACT 651 177 719 Antisense
GTTCGCATATCAACGACGTGCTGGA 493 441 746 Antisense
Sequence Source Affymetrix Proprietary Database