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[191873_at]

Description K01D12.13 /REP_DB=WormBase Gene ID /WP=CE06052 /TR=Q21097 /GB=CAA99874.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Glutathione S-transferases.
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 07      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 80      6grp_total > 08      4grp_total > 60      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 610
1 2 3 4 range
A 688.2
(2.3)
P 		458.1
(0.1)
P 		756.5
(3)
P 		146.9
(-3)
P 		610
B 563.9
(1.1)
P 		533.1
(0.7)
P 		726.4
(3)
P 		214.2
(-3)
P 		512
C 627.5
(1.7)
P 		618
(1.6)
P 		743.6
(3)
P 		221.2
(-3)
P 		522
avr 626.5
(1.7) 		536.4
(0.7) 		742.2
(3) 		194.1
(-3) 		548

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 348.3
(3)
P 		131.1
(-2.5)
P 		151.6
(-2)
P 		172.3
(-1.5)
P 		111.7
(-3)
P 		141.8
(-2.2)
P 		237
B 310.8
(3)
P 		71.5
(-3)
P 		190.4
(-0)
P 		191.7
(0)
P 		85.7
(-2.6)
P 		110
(-2)
P 		239
C 326.8
(3)
P 		89.7
(-3)
P 		184.1
(-0.6)
P 		220.8
(0.3)
P 		128
(-2)
P 		143.1
(-1.6)
P 		237
avr 328.6
(3) 		97.4
(-3) 		175.4
(-1) 		194.9
(-0.5) 		108.5
(-2.7) 		131.6
(-2.1) 		231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 250.6
(3)
P 		99.4
(-1)
P 		197.8
(1.6)
P 		21.5
(-3)
P 		229
B 179.8
(3)
P 		131.7
(0.8)
P 		168.3
(2.5)
P 		45.6
(-3)
P 		134
C 207.7
(1.6)
P 		177.7
(0.8)
P 		259.2
(3)
P 		37.3
(-3)
P 		222
avr 212.7
(3) 		136.3
(0.4) 		208.4
(2.9) 		34.8
(-3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 64.2
(3)
P 		46.6
(-0.4)
P 		33
(-3)
P 		43.7
(-0.9)
P 		33.7
(-2.9)
P 		34.5
(-2.7)
P 		31
B 108.1
(3)
P 		23.8
(-3)
P 		46.2
(-1.4)
P 		50.8
(-1.1)
P 		34.8
(-2.2)
P 		41
(-1.8)
P 		84
C 121.1
(3)
P 		27.4
(-3)
P 		46.9
(-1.8)
P 		44.4
(-1.9)
P 		41.4
(-2.1)
P 		47.9
(-1.7)
P 		94
avr 97.8
(3) 		32.6
(-3) 		42
(-2.1) 		46.3
(-1.7) 		36.6
(-2.6) 		41.1
(-2.2) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191873_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13989
Sequence Type Exemplar sequence
Representative Public ID K01D12.13 NCBI
Target Description K01D12.13 /REP_DB=WormBase Gene ID /WP=CE06052 /TR=Q21097 /GB=CAA99874.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Glutathione S-transferases.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028852(11), NM_001028851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028852 NCBI Caenorhabditis elegans CaDmium Responsive family member (cdr-7) (cdr-7) mRNA, complete cds. 11/11 None
NM_001028851 NCBI Caenorhabditis elegans CaDmium Responsive family member (cdr-7) (cdr-7) mRNA, complete cds. 11/11 None
SNAP00000038014 ENSEMBL cdna:SNAP chromosome:CEL140:V:12413575:12414622:-1 11/11 None
GENEFINDER00000038038 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12412003:12414622:-1 11/11 None
K01D12.13 ENSEMBL cdna:known chromosome:CEL140:V:12413575:12414640:-1 gene:K01D12.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12413574-12414640(-) 100.0 100.0
Public Domain and Genome References
Ensembl K01D12.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU43722 cadmium-inducible lysosomal protein CDR-7 [Caenorhabditis elegans] emb|CAI79192.1| Hypothetical protein K01D12.13b [Caenorhabditis elegans] ref|NP_001024023.1| CaDmium Responsive family member (cdr-7) [Caenorhabditis elegans] 1.0E-162
blast CAA99874 Hypothetical protein K01D12.13a [Caenorhabditis elegans] ref|NP_001024022.1| CaDmium Responsive family member (cdr-7) [Caenorhabditis elegans] 1.0E-161
blast CAA99874 Hypothetical protein K01D12.13a [Caenorhabditis elegans] ref|NP_001024022.1| CaDmium Responsive family member (cdr-7) [Caenorhabditis elegans] 1.0E-160
blast AAU43722 cadmium-inducible lysosomal protein CDR-7 [Caenorhabditis elegans] emb|CAI79192.1| Hypothetical protein K01D12.13b [Caenorhabditis elegans] ref|NP_001024023.1| CaDmium Responsive family member (cdr-7) [Caenorhabditis elegans] 1.0E-160
blast CAA99874 Hypothetical protein K01D12.13a [Caenorhabditis elegans] ref|NP_001024022.1| CaDmium Responsive family member (cdr-7) [Caenorhabditis elegans] 1.0E-153
blast AAU43722 cadmium-inducible lysosomal protein CDR-7 [Caenorhabditis elegans] emb|CAI79192.1| Hypothetical protein K01D12.13b [Caenorhabditis elegans] ref|NP_001024023.1| CaDmium Responsive family member (cdr-7) [Caenorhabditis elegans] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 0.0025
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 0.0025
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 0.0025
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 0.0029
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 9.3E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038038 1 268-290
Sequence
Target Sequence 
>C. ELEGANS:191873_AT
aagaagtggcactcttccattcatcgaactcaacgaagagcacatatctgattcagatct
gattgagattcgtctcaggcaacattttaaacttccgatgctttcactggaagaagaagc
acaggcaacttccctgagtagaatggtagacaatcatcttttccacatccttatgagata
tcactgtgcagatgatatcttctactacacattcctcgatttgttggattttaaatccta
tgttatcccactcattctacctttcatgaaaatgataattggaggcaaaatctatcaaaa
ttctacatcagcaattggagactttgagccagcagagttggatgaattgcttcatcgaga
tttgagagttgtggaaactatccttggaaataagaaatatttatttggagaccacattgc
tccagttgatgcgacggtttttagccagttggcagttgtttattatccattttacactca
catctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAGTGGCACTCTTCCATTCATC 671 151 303 Antisense
GAGATTCGTCTCAGGCAACATTTTA 508 395 367 Antisense
TTTAAACTTCCGATGCTTTCACTGG 424 673 388 Antisense
GAAGCACAGGCAACTTCCCTGAGTA 255 341 418 Antisense
AATCATCTTTTCCACATCCTTATGA 297 171 454 Antisense
TTCTACTACACATTCCTCGATTTGT 267 691 502 Antisense
AAATCCTATGTTATCCCACTCATTC 199 119 535 Antisense
CCCACTCATTCTACCTTTCATGAAA 242 259 549 Antisense
GAGACCACATTGCTCCAGTTGATGC 106 395 710 Antisense
GCGACGGTTTTTAGCCAGTTGGCAG 614 287 733 Antisense
ATTATCCATTTTACACTCACATCTC 683 13 764 Antisense
Sequence Source Affymetrix Proprietary Database