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[191871_s_at] glutathione S-transferase

Description K01D12.11 /REP_DB=WormBase Gene ID /WP=CE06050 /TR=Q21099 /GB=CAA99876.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Glutathione S-transferases.
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 21      6grp_total > 34      4grp_total > 55      6grp_highest_sub > De      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 512
1 2 3 4 range
A 1083.4
(3)
P 		782.2
(-3)
P 		812
(-2.4)
P 		985.2
(1)
P 		301
B 1137.7
(3)
P 		625.4
(-3)
P 		862.4
(-0.2)
P 		801
(-0.9)
P 		512
C 1124.9
(3)
P 		672.1
(-3)
P 		831.4
(-0.9)
P 		668.3
(-3)
P 		457
avr 1115.3
(3) 		693.2
(-3) 		835.3
(-1) 		818.2
(-1.2) 		422

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1178
1 2 3 4 5 6 range
A 1901.3
(3)
P 		1372.8
(0.2)
P 		1811.2
(2.5)
P 		1162.7
(-0.9)
P 		779.5
(-3)
P 		770.6
(-3)
P 		1131
B 1917
(3)
P 		1475.7
(0.7)
P 		1768.2
(2.2)
P 		1145.5
(-0.9)
P 		743.7
(-3)
P 		942.7
(-2)
P 		1173
C 1764.1
(3)
P 		1478.8
(1.3)
P 		1389.1
(0.8)
P 		1153.1
(-0.6)
P 		739.5
(-3)
P 		1078.9
(-1)
P 		1025
avr 1860.8
(3) 		1442.4
(0.7) 		1656.2
(1.9) 		1153.8
(-0.8) 		754.2
(-3) 		930.7
(-2) 		1107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 394.5
(3)
P 		169.8
(-2.4)
P 		212.3
(-1.4)
P 		144.2
(-3)
P 		250
B 362.8
(3)
P 		154.5
(-3)
P 		199.8
(-1.7)
P 		170.7
(-2.5)
P 		208
C 372.4
(3)
P 		193.2
(-1.1)
P 		289.8
(1.1)
P 		112.7
(-3)
P 		260
avr 376.6
(3) 		172.5
(-2.2) 		234
(-0.7) 		142.5
(-3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 479
1 2 3 4 5 6 range
A 350.5
(0.3)
P 		488.2
(3)
P 		394.4
(1.1)
P 		294.9
(-0.9)
P 		235.2
(-2)
P 		187.6
(-3)
P 		301
B 667
(3)
P 		491.2
(0.1)
P 		429.4
(-0.9)
P 		303.4
(-3)
P 		302.1
(-3)
P 		351.5
(-2.2)
P 		365
C 653.9
(3)
P 		451.2
(0.1)
P 		353.6
(-1.3)
P 		231.9
(-3)
P 		239.3
(-2.9)
P 		361.2
(-1.2)
P 		422
avr 557.1
(3) 		476.9
(1.4) 		392.5
(-0.3) 		276.7
(-2.6) 		258.9
(-3) 		300.1
(-2.2) 		298
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191871_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13550
Sequence Type Exemplar sequence
Representative Public ID K01D12.11 NCBI
Target Description K01D12.11 /REP_DB=WormBase Gene ID /WP=CE06050 /TR=Q21099 /GB=CAA99876.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Glutathione S-transferases.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073709(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073709 NCBI Caenorhabditis elegans CaDmium Responsive family member (cdr-4) (cdr-4) mRNA, complete cds. 11/11 None
SNAP00000007098 ENSEMBL cdna:SNAP chromosome:CEL140:V:12410027:12411156:-1 11/11 None
K01D12.11 ENSEMBL cdna:known chromosome:CEL140:V:12409952:12411178:-1 gene:K01D12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12410026-12411156(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol cdr-4
Ensembl K01D12.11
Entrez Gene 259654 Entrez gene
SwissProt Q21099 EMBL-EBI
WormBase CE06050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU43725 cadmium-inducible lysosomal protein CDR-4 [Caenorhabditis elegans] emb|CAA99876.1| Hypothetical protein K01D12.11 [Caenorhabditis elegans] ref|NP_506110.1| CaDmium Responsive family member (cdr-4) [Caenorhabditis elegans] 1.0E-141
blast AAU43721 cadmium-inducible lysosomal protein CDR-6 [Caenorhabditis elegans] emb|CAA99802.1| Hypothetical protein K01D12.12 [Caenorhabditis elegans] ref|NP_506113.1| CaDmium Responsive family member (cdr-6) [Caenorhabditis elegans] 1.0E-117
blast CAE69635 Hypothetical protein CBG15876 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506110.1 1 2-21
K01D12.11 1 2-21
SNAP00000007098 1 2-21
Sequence
Target Sequence 
>C. ELEGANS:191871_S_AT
tcgaaacttcaatgtctcgctcaagaaatggaacattaccgttcattgagctcaacggtg
agcatattgccgattcagatctgatcgagattcgtttgagacaacatttcaaaattccat
ccctgcccgacgagcaagaagctcaatcagttgctttgagcagaatggctgacaatcatt
tgttctacattctcatccgctacaagagcgcttctgactcgctttacaacattttcggtg
atctcttcaacttgccatcatttttagttccagtggttattccagtggtccgagcatttt
tcaaacgaaagatttactaccgatgtgttggagcaatcggagattttgaaccacaagaac
ttgatgagcttcttcatagagatctcaaagttattcaagattcaatcaaaggaaatttcc
tgttcggagacaagatcacaccggcggatgcaacagtgtttggtcaattggcaactgtat
attatcctattcgttctcatctgaccgatgttcttgacaaagatttccccaaggtgcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAAACTTCAATGTCTCGCTCAAG 696 599 254 Antisense
AACATTACCGTTCATTGAGCTCAAC 40 137 285 Antisense
CAAGAGCGCTTCTGACTCGCTTTAC 267 185 456 Antisense
GACTCGCTTTACAACATTTTCGGTG 355 375 469 Antisense
ATTTTCGGTGATCTCTTCAACTTGC 130 15 484 Antisense
CTTGCCATCATTTTTAGTTCCAGTG 263 219 504 Antisense
GTTCCAGTGGTTATTCCAGTGGTCC 302 439 520 Antisense
CCAGTGGTCCGAGCATTTTTCAAAC 221 273 535 Antisense
GACAAGATCACACCGGCGGATGCAA 475 365 682 Antisense
TATTATCCTATTCGTTCTCATCTGA 257 663 733 Antisense
GACAAAGATTTCCCCAAGGTGCTTG 373 365 769 Antisense
Sequence Source Affymetrix Proprietary Database