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[191868_at] cell division control protein

Description T22C1.3 /REP_DB=WormBase Gene ID /WP=CE06491 /TR=Q22672 /GB=CAA99928.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=cell division control protein
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 84      6grp_total > 78      4grp_total > 51      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 374
1 2 3 4 range
A 633.4
(-0.7)
P 		737.6
(3)
P 		661.7
(0.3)
P 		569.2
(-3)
P 		168
B 766.3
(2.2)
P 		799.5
(3)
P 		699.7
(0.5)
P 		556.6
(-3)
P 		243
C 613.4
(-1.3)
P 		879.9
(3)
P 		729.3
(0.6)
P 		505.6
(-3)
P 		374
avr 671
(-0.1) 		805.7
(3) 		696.9
(0.5) 		543.8
(-3) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 753
(0.4)
P 		527.3
(-3)
P 		679.4
(-0.7)
P 		630.9
(-1.4)
P 		753.6
(0.4)
P 		921.5
(3)
P 		394
B 666.1
(-0.6)
P 		537.4
(-2.8)
P 		527
(-3)
P 		603.9
(-1.7)
P 		630.3
(-1.2)
P 		879.6
(3)
P 		353
C 575.6
(-3)
P 		588
(-2.8)
P 		658.2
(-1.5)
P 		639.7
(-1.9)
P 		726.3
(-0.3)
P 		912.8
(3)
P 		337
avr 664.9
(-1.1) 		550.9
(-3) 		621.5
(-1.8) 		624.8
(-1.7) 		703.4
(-0.4) 		904.6
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 230.6
(3)
P 		160.1
(0.1)
P 		173
(0.7)
P 		83.3
(-3)
P 		147
B 244.4
(3)
P 		197.5
(0.8)
P 		162.1
(-0.9)
P 		118.6
(-3)
P 		126
C 203.1
(1.2)
P 		253
(3)
P 		254.2
(3)
P 		85.2
(-3)
P 		169
avr 226
(3) 		203.5
(2) 		196.4
(1.6) 		95.7
(-3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 138.8
(-3)
P 		187.5
(0.3)
P 		148
(-2.4)
P 		160
(-1.6)
P 		227.4
(3)
P 		224.3
(2.8)
P 		89
B 231.8
(0.1)
P 		178.9
(-1.5)
P 		128
(-3)
P 		160
(-2)
P 		256.1
(0.8)
P 		328
(3)
P 		200
C 213.4
(-0.1)
P 		179.4
(-1.3)
P 		167.5
(-1.7)
P 		128.6
(-3)
P 		235
(0.6)
P 		305.6
(3)
P 		177
avr 194.7
(-1) 		181.9
(-1.5) 		147.8
(-3) 		149.5
(-2.9) 		239.5
(1) 		286
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191868_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.414
Sequence Type Exemplar sequence
Representative Public ID T22C1.3 NCBI
Target Description T22C1.3 /REP_DB=WormBase Gene ID /WP=CE06491 /TR=Q22672 /GB=CAA99928.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=cell division control protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059788(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059788 NCBI Caenorhabditis elegans T22C1.3 (T22C1.3) mRNA, complete cds. 11/11 None
SNAP00000000047 ENSEMBL cdna:SNAP chromosome:CEL140:I:7946698:7948198:1 11/11 None
GENEFINDER00000000069 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7946698:7948198:1 11/11 None
T22C1.3 ENSEMBL cdna:known chromosome:CEL140:I:7946686:7948198:1 gene:T22C1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7946628-7948129(+) 100.0 100.0
Public Domain and Genome References
Gene Title cell division control protein
Ensembl T22C1.3
Entrez Gene 172565 Entrez gene
SwissProt Q22672 EMBL-EBI
WormBase CE06491 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99928 Hypothetical protein T22C1.3 [Caenorhabditis elegans] ref|NP_492189.1| T22C1.3 [Caenorhabditis elegans] 0.0
blast CAE63728 Hypothetical protein CBG08253 [Caenorhabditis briggsae] 1.0E-168
blast CAE63728 Hypothetical protein CBG08253 [Caenorhabditis briggsae] 1.0E-167
blast CAA99928 Hypothetical protein T22C1.3 [Caenorhabditis elegans] ref|NP_492189.1| T22C1.3 [Caenorhabditis elegans] 5.0E-95
blast CAA99928 Hypothetical protein T22C1.3 [Caenorhabditis elegans] ref|NP_492189.1| T22C1.3 [Caenorhabditis elegans] 2.0E-93
blast CAE63728 Hypothetical protein CBG08253 [Caenorhabditis briggsae] 2.0E-70
blast EAA12300 ENSANGP00000011629 [Anopheles gambiae str. PEST] ref|XP_317383.2| ENSANGP00000011629 [Anopheles gambiae str. PEST] 7.0E-52
blast EAA12300 ENSANGP00000011629 [Anopheles gambiae str. PEST] ref|XP_317383.2| ENSANGP00000011629 [Anopheles gambiae str. PEST] 2.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR009600 EMBL-EBI GPI transamidase subunit PIG-U 3.2E-100
Pfam IPR009600 EMBL-EBI GPI transamidase subunit PIG-U 3.4E-102
Pfam IPR009600 EMBL-EBI GPI transamidase subunit PIG-U 3.4E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492189.1 6 91-113,153-175,180-202,212-234,247-269,279-301
T22C1.3 6 91-113,153-175,180-202,212-234,247-269,279-301
SNAP00000000047 9 98-120,140-162,182-204,213-235,245-267,274-296,306-330,343-365,375-397
GENEFINDER00000000069 9 100-122,142-164,184-206,215-237,247-269,276-298,308-332,345-367,377-399
Sequence
Target Sequence 
>C. ELEGANS:191868_AT
cagtgctgccgatgtcgtttggaggcaaactcacggatcttcaagtattagaaaactgat
tttcagtctctatgcattcaatcccatcacaatagtctctacaggaattctatcactgac
tgttattcagaatttcgtctcagccgtcattttattatcactgatcttcgaacatttccg
atcattctacacaatgtcatttgttgtgctgtatttcttcatgccaattccaattacttt
tttgattaggaaagatacaattctgcattttactataatcggatttcttgtctcaatatt
tttcccatatccaactttaaaccaagtgtctcttcttctagctttccttccagttcatga
tgtttataaaaaacacttccggtacacaatactcatcgccggtacgatcgtctccacagt
cttcttaatgccagttatgtggcatatgtggatcgtcagttctagtggaaatgctaactt
cttcttcggaaccacaattgtttacaatgtggcgctaatcaatttagttatggatatgat
cttcgtttactcgcgacgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTGCTGCCGATGTCGTTTGGAGG 490 207 369 Antisense
TTCAGTCTCTATGCATTCAATCCCA 31 689 430 Antisense
TCAATCCCATCACAATAGTCTCTAC 475 633 446 Antisense
ATTTCGTCTCAGCCGTCATTTTATT 145 17 500 Antisense
GAACATTTCCGATCATTCTACACAA 697 349 538 Antisense
GTTGTGCTGTATTTCTTCATGCCAA 501 437 571 Antisense
TAAACCAAGTGTCTCTTCTTCTAGC 555 639 686 Antisense
AATACTCATCGCCGGTACGATCGTC 41 173 756 Antisense
CTCCACAGTCTTCTTAATGCCAGTT 568 233 780 Antisense
GAAATGCTAACTTCTTCTTCGGAAC 692 361 836 Antisense
TGATCTTCGTTTACTCGCGACGACA 72 565 905 Antisense
Sequence Source Affymetrix Proprietary Database