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[191867_at] 2,4-dienoyl-CoA reductase

Description T05C12.3 /REP_DB=WormBase Gene ID /WP=CE02315 /TR=SW:Q22230 /GB=CAA91310.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=2,4-dienoyl-CoA reductase
Cluster 6grp_total > 98      4grp_total > 37      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 15.3
(-1.7)
A 		38.9
(3)
A 		8.9
(-3)
A 		29.9
(1.2)
A 		30
B 4
(-3)
A 		6.6
(-0.6)
A 		10.4
(3)
A 		9.3
(2)
A 		6
C 50.6
(3)
A 		10
(-2.1)
A 		2.8
(-3)
A 		18.3
(-1.1)
A 		48
avr 23.3
(3) 		18.5
(1.2) 		7.4
(-3) 		19.2
(1.5) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 3.3
(-3)
A 		4.1
(-3)
A 		34.1
(-1.4)
A 		7.4
(-2.8)
A 		84.9
(1.2)
A 		120.2
(3)
P 		117
B 33.6
(-1.4)
A 		12.3
(-2.7)
A 		8.2
(-3)
A 		49.8
(-0.4)
A 		104.4
(3)
P 		103.6
(3)
P 		96
C 5.3
(-2.8)
A 		2.4
(-3)
A 		8
(-2.6)
A 		20.9
(-1.8)
A 		74.1
(1.7)
M 		93.2
(3)
P 		91
avr 14.1
(-2.5) 		6.3
(-3) 		16.8
(-2.4) 		26
(-1.8) 		87.8
(1.9) 		105.7
(3) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.6
(0.2)
A 		8.4
(3)
A 		2.3
(-3)
A 		4.4
(-0.9)
A 		6
B 1.3
(-3)
A 		1.6
(-1.4)
A 		2.4
(3)
A 		2
(0.8)
A 		1
C 16.8
(3)
A 		2.9
(-2.3)
A 		1
(-3)
A 		3.1
(-2.2)
A 		16
avr 7.9
(3) 		4.3
(-0.6) 		1.9
(-3) 		3.2
(-1.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.4
(-2.8)
A 		7.4
(-1.6)
A 		1.9
(-2.7)
A 		25.6
(2.2)
A 		29.3
(3)
P 		29
B 11.7
(-1.6)
A 		4.1
(-2.7)
A 		2
(-3)
A 		13.2
(-1.3)
A 		42.4
(3)
P 		38.6
(2.4)
P 		40
C 1.9
(-2.8)
A 		0.7
(-3)
A 		2
(-2.7)
A 		4.2
(-2.3)
A 		24
(1.6)
M 		31.2
(3)
P 		31
avr 4.7
(-2.5) 		2.1
(-3) 		3.8
(-2.7) 		6.4
(-2.2) 		30.7
(2.6) 		33
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191867_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2829
Sequence Type Exemplar sequence
Representative Public ID T05C12.3 NCBI
Target Description T05C12.3 /REP_DB=WormBase Gene ID /WP=CE02315 /TR=SW:Q22230 /GB=CAA91310.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=2,4-dienoyl-CoA reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063313(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063313 NCBI Caenorhabditis elegans DYnein Light chain (Tctex type] family member (dylt-3) (dylt-3) mRNA, complete cds. 11/11 None
SNAP00000002108 ENSEMBL cdna:SNAP chromosome:CEL140:II:8172197:8173310:-1 11/11 None
GENEFINDER00000002126 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8172197:8173460:-1 11/11 None
T05C12.3 ENSEMBL cdna:known chromosome:CEL140:II:8172197:8173460:-1 gene:T05C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8172193-8173457(-) 100.0 100.0
Public Domain and Genome References
Gene Title 2,4-dienoyl-CoA reductase
Gene Symbol dylt-3
Ensembl T05C12.3
Entrez Gene 174316 Entrez gene
SwissProt Q22230 EMBL-EBI
WormBase CE02315 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91310 Hypothetical protein T05C12.3 [Caenorhabditis elegans] ref|NP_495714.1| DYnein Light chain (Tctex type] family member (dylt-3) [Caenorhabditis elegans] sp|Q22230|YVX3_CAEEL Hypothetical oxidoreductase T05C12.3 1.0E-169
blast CAA91310 Hypothetical protein T05C12.3 [Caenorhabditis elegans] ref|NP_495714.1| DYnein Light chain (Tctex type] family member (dylt-3) [Caenorhabditis elegans] sp|Q22230|YVX3_CAEEL Hypothetical oxidoreductase T05C12.3 1.0E-154
blast CAA90268 Hypothetical protein W01C9.4 [Caenorhabditis elegans] ref|NP_495805.1| W01C9.4 [Caenorhabditis elegans] sp|Q23116|YWC4_CAEEL Hypothetical oxidoreductase W01C9.4 1.0E-144
blast CAE57591 Hypothetical protein CBG00572 [Caenorhabditis briggsae] 1.0E-131
blast CAA90268 Hypothetical protein W01C9.4 [Caenorhabditis elegans] ref|NP_495805.1| W01C9.4 [Caenorhabditis elegans] sp|Q23116|YWC4_CAEEL Hypothetical oxidoreductase W01C9.4 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.2E-45
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.2E-45
Sequence
Target Sequence 
>C. ELEGANS:191867_AT
ggaaagcacccagatattttggttaacaatgcagctggtaacttcataatggcaactgag
cgtctttctccaaatgcccacggaacaattattgatattgttctcaaaggaacaatgaat
gttaccacggaattgggaaaacgttgcattcagagtaaaaccggagcctccgttacttca
attactgctgcatacgcacgttctggtgccccattcattgttccttctgctgtttctaaa
gctggagttgagataatgactaagtcattggcaactgaatggtcaaaatatggtcttcgt
ttcaatgcagtatctcctggaccaattccaacaaaaggtgcatggggaagattgttttct
ggagaaatgggtgacgtcgccgaaaaaatgaaggaattgaacccagaaggacgatctgga
actccagaagaagttgcgaatttagtggcattcatctcgtcagatcacatgtcatttatg
aatggagtgatcatcgatttggatggtggacagcaacatttcaaccatggttcccatatg
ggagacttcttgcacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAGCACCCAGATATTTTGGTTA 33 527 316 Antisense
GCAGCTGGTAACTTCATAATGGCAA 477 313 346 Antisense
TAATGGCAACTGAGCGTCTTTCTCC 469 635 362 Antisense
CTTTCTCCAAATGCCCACGGAACAA 168 221 379 Antisense
TGCATTCAGAGTAAAACCGGAGCCT 423 575 460 Antisense
CCTCCGTTACTTCAATTACTGCTGC 663 265 482 Antisense
TGCTGCATACGCACGTTCTGGTGCC 173 583 501 Antisense
CTGGAGAAATGGGTGACGTCGCCGA 243 241 674 Antisense
ATTTAGTGGCATTCATCTCGTCAGA 600 15 755 Antisense
ATCTCGTCAGATCACATGTCATTTA 353 33 769 Antisense
CCATATGGGAGACTTCTTGCACACT 655 269 849 Antisense
Sequence Source Affymetrix Proprietary Database