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[191866_at] mannose receptor protein like

Description D1054.7 /REP_DB=WormBase Gene ID /WP=CE05525 /TR=Q18944 /GB=CAA98436.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=mannose receptor protein like
Cluster 6grp_total > 83      4grp_total > 25      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.1
(-3)
A 		8.1
(1.1)
A 		5.1
(-2)
A 		9.9
(3)
A 		6
B 5.7
(3)
A 		5.4
(1.5)
A 		4.8
(-1.5)
A 		4.5
(-3)
A 		1
C 2.5
(-2.5)
A 		2.3
(-3)
A 		4.2
(1.6)
A 		4.8
(3)
A 		3
avr 4.1
(-3) 		5.3
(0.1) 		4.7
(-1.4) 		6.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 2.1
(-3)
A 		1.8
(-3)
A 		5.5
(-2.7)
A 		79.5
(3)
A 		33
(-0.6)
A 		20.6
(-1.5)
A 		78
B 3.7
(-3)
A 		4.1
(-2.9)
A 		5.8
(-2.8)
A 		60.9
(1.6)
P 		79.3
(3)
P 		3.1
(-3)
A 		76
C 6.4
(-2.6)
A 		3.1
(-3)
A 		2.8
(-3)
A 		7
(-2.6)
A 		60.1
(3)
A 		3.1
(-3)
A 		57
avr 4.1
(-2.9) 		3
(-3) 		4.7
(-2.8) 		49.1
(2.1) 		57.5
(3) 		8.9
(-2.4) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.5
(-0.6)
A 		1.8
(3)
A 		1.3
(-3)
A 		1.5
(-0.6)
A 		1
B 1.8
(3)
A 		1.3
(-0.8)
A 		1.1
(-2.3)
A 		1
(-3)
A 		1
C 0.8
(-2.3)
A 		0.7
(-3)
A 		1.5
(3)
A 		0.8
(-2.3)
A 		1
avr 1.4
(3) 		1.3
(1) 		1.3
(1) 		1.1
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-2.9)
A 		1.2
(-2.8)
A 		20.2
(3)
A 		9.9
(-0.1)
A 		5
(-1.6)
A 		20
B 1.3
(-3)
A 		1.4
(-3)
A 		1.4
(-3)
A 		16.1
(-0.1)
P 		32.2
(3)
P 		1.2
(-3)
A 		31
C 2.4
(-2.5)
A 		1
(-2.9)
A 		0.7
(-3)
A 		1.4
(-2.8)
A 		19.5
(3)
A 		1.1
(-2.9)
A 		19
avr 1.4
(-2.9) 		1
(-3) 		1.1
(-3) 		12.6
(0.6) 		20.5
(3) 		2.4
(-2.6) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191866_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14626
Sequence Type Exemplar sequence
Representative Public ID D1054.7 NCBI
Target Description D1054.7 /REP_DB=WormBase Gene ID /WP=CE05525 /TR=Q18944 /GB=CAA98436.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=mannose receptor protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073353 NCBI Caenorhabditis elegans D1054.7 (D1054.7) mRNA, complete cds. 11/11 None
D1054.7 ENSEMBL cdna:known chromosome:CEL140:V:10784049:10785333:-1 gene:D1054.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017220 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10784048-10784706(-) 85.67 85.67
Public Domain and Genome References
Gene Title mannose receptor protein like
Ensembl D1054.7
Entrez Gene 183916 Entrez gene
SwissProt Q18944 EMBL-EBI
WormBase CE05525 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98436 Hypothetical protein D1054.7 [Caenorhabditis elegans] ref|NP_505754.1| D1054.7 [Caenorhabditis elegans] 8.0E-63
blast CAB03933 Hypothetical protein C31G12.2 [Caenorhabditis elegans] ref|NP_507555.1| C31G12.2 [Caenorhabditis elegans] 7.0E-27
blast CAA19554 Hypothetical protein Y68A4B.1 [Caenorhabditis elegans] ref|NP_507370.1| Y68A4B.1 [Caenorhabditis elegans] 2.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505754.1 1 15-34
D1054.7 1 15-34
Sequence
Target Sequence 
>C. ELEGANS:191866_AT
agtggagtactgtgttggtatggcaggaaaactacaatcttcgtttttatctttgcctgg
ttcaatgatgaattttatatggattggcgctaaaaggacaaccgcgtgtactgggatgat
gttgacagcaacatgcaccaaactaaattctttcgaatggacagacggctcaacgacagg
caccgatggatttatttgggagactggagaaccaaacaatgcatcgtcgatggaagactg
tatcgctgtggacgcagtgacggggggtttgggtgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGGAGTACTGTGTTGGTATGGCA 531 57 24 Antisense
CAATCTTCGTTTTTATCTTTGCCTG 516 181 58 Antisense
ATCTTTGCCTGGTTCAATGATGAAT 485 31 72 Antisense
GGACAACCGCGTGTACTGGGATGAT 563 523 119 Antisense
GTTGACAGCAACATGCACCAAACTA 79 439 144 Antisense
GCACCAAACTAAATTCTTTCGAATG 621 313 158 Antisense
GCTCAACGACAGGCACCGATGGATT 668 301 191 Antisense
GAGAACCAAACAATGCATCGTCGAT 272 391 230 Antisense
GGAAGACTGTATCGCTGTGGACGCA 573 531 255 Antisense
GTATCGCTGTGGACGCAGTGACGGG 381 455 263 Antisense
GCAGTGACGGGGGGTTTGGGTGATC 559 265 277 Antisense
Sequence Source Affymetrix Proprietary Database