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[191865_s_at] protein-tyrosine phosphatase /// protein-tyrosine-phosphatase

Description F35C11.2 /REP_DB=WormBase Gene ID /WP=CE02209 /TR=Q20019 /GB=CAA90242.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 89      4grp_total > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 53.2
(3)
A 		25.7
(-1.2)
A 		22
(-1.8)
A 		14.1
(-3)
A 		39
B 15.5
(3)
A 		3.1
(-3)
A 		8.3
(-0.5)
A 		6.5
(-1.4)
A 		12
C 4
(-2.7)
A 		7.7
(0.8)
A 		3.7
(-3)
A 		10
(3)
A 		6
avr 24.2
(3) 		12.2
(-2.1) 		11.3
(-2.5) 		10.2
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 66.1
(-0.6)
A 		8
(-2.9)
A 		7.4
(-2.9)
A 		4.7
(-3)
A 		85.4
(0.2)
A 		155.8
(3)
P 		151
B 53.6
(-1.3)
A 		7.4
(-2.9)
A 		4.9
(-2.9)
A 		3.3
(-3)
A 		108.2
(0.4)
P 		186
(3)
P 		183
C 26.7
(-3)
A 		30.6
(-2.8)
A 		26.7
(-3)
A 		27.8
(-3)
A 		116.2
(0.7)
P 		170.9
(3)
P 		144
avr 48.8
(-1.6) 		15.3
(-2.9) 		13
(-3) 		11.9
(-3) 		103.3
(0.4) 		170.9
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.4
(3)
A 		5.6
(-1.8)
A 		5.7
(-1.8)
A 		2.1
(-3)
A 		17
B 4.9
(3)
A 		0.8
(-3)
A 		1.9
(-1.4)
A 		1.4
(-2.1)
A 		4
C 1.3
(-3)
A 		2.2
(3)
A 		1.3
(-3)
A 		1.7
(-0.3)
A 		1
avr 8.5
(3) 		2.9
(-1.9) 		3
(-1.9) 		1.7
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 12.2
(-1.2)
A 		2.8
(-2.7)
A 		1.6
(-2.9)
A 		1.2
(-3)
A 		25.8
(1)
A 		37.9
(3)
P 		37
B 18.7
(-1.4)
A 		2.5
(-2.9)
A 		1.2
(-3)
A 		0.9
(-3)
A 		44
(0.8)
P 		69.3
(3)
P 		68
C 9.9
(-2.5)
A 		9.3
(-2.6)
A 		6.8
(-2.9)
A 		5.6
(-3)
A 		37.6
(0.7)
P 		57.2
(3)
P 		52
avr 13.6
(-1.7) 		4.9
(-2.7) 		3.2
(-2.9) 		2.6
(-3) 		35.8
(0.8) 		54.8
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191865_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3008
Sequence Type Exemplar sequence
Representative Public ID F35C11.2 NCBI
Target Description F35C11.2 /REP_DB=WormBase Gene ID /WP=CE02209 /TR=Q20019 /GB=CAA90242.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063335(11), NM_063388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063335 NCBI Caenorhabditis elegans F35C11.2 (F35C11.2) mRNA, complete cds. 11/11 None
NM_063388 NCBI Caenorhabditis elegans M05D6.3 (protein-tyrosine-phosphatase) mRNA, complete cds. 11/11 None
SNAP00000015528 ENSEMBL cdna:SNAP chromosome:CEL140:II:8475773:8477845:1 11/11 None
GENEFINDER00000015541 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8475776:8477845:1 11/11 None
SNAP00000018022 ENSEMBL cdna:SNAP chromosome:CEL140:II:8244189:8246262:-1 11/11 None
GENEFINDER00000018028 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8244189:8246259:-1 11/11 None
F35C11.2 ENSEMBL cdna:known chromosome:CEL140:II:8244189:8246259:-1 gene:F35C11.2 11/11 None
M05D6.3 ENSEMBL cdna:known chromosome:CEL140:II:8475776:8477845:1 gene:M05D6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8475772-8477842(+) 99.08 99.08
chrII:8244185-8246256(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
protein-tyrosine-phosphatase
Ensembl F35C11.2
M05D6.3
Entrez Gene 174355 Entrez gene
185271 Entrez gene
SwissProt Q20019 EMBL-EBI
Q21522 EMBL-EBI
WormBase CE02209 Wormbase
CE03501 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90242 Hypothetical protein F35C11.2 [Caenorhabditis elegans] ref|NP_495736.1| F35C11.2 [Caenorhabditis elegans] 0.0
blast CAA91412 Hypothetical protein M05D6.3 [Caenorhabditis elegans] ref|NP_495789.1| M05D6.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-49
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-49
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.2E-51
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.2E-51
Sequence
Target Sequence 
>C. ELEGANS:191865_S_AT
gagctcaaagccaagatctgtcgtaaattttggccggaaaaaggatcgaagaaagatttt
cccgcattgtcgattcaagcatcagatgatcattcggagactcatatgaagacgttcaat
ctgacagtcactgagaagaaacaagatcatcaaactgttctcatgcatttctatgagtgg
gcggatgcatccaagttgccggagtacatgttggatatgagagcttcgatcaaactgcaa
tacattcgtagttctaagaagactggtgtctgcattggtccgattatgctcgtttgtgcc
actggagttgaaaaatgcgcaatttatgcaacaattgacatcattgtgagccgcatcacc
gaggagcacagagtcggattcaaggaaacaatgtcggcaatcaagatgcagagattcgga
tgtttccgtactgttgggccatactcgactgcttgtgaaatgctcatgaagtttgctgtc
acaactggtgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCAAAGCCAAGATCTGTCGTA 161 389 610 Antisense
GATCTGTCGTAAATTTTGGCCGGAA 538 417 624 Antisense
ATCAAACTGTTCTCATGCATTTCTA 551 27 758 Antisense
GGATGCATCCAAGTTGCCGGAGTAC 708 513 792 Antisense
GAGAGCTTCGATCAAACTGCAATAC 406 395 828 Antisense
GAAGACTGGTGTCTGCATTGGTCCG 64 339 867 Antisense
ACATCATTGTGAGCCGCATCACCGA 475 105 947 Antisense
GAGATTCGGATGTTTCCGTACTGTT 66 397 1020 Antisense
CGTACTGTTGGGCCATACTCGACTG 270 247 1036 Antisense
ACTCGACTGCTTGTGAAATGCTCAT 638 99 1052 Antisense
GAAGTTTGCTGTCACAACTGGTGTT 68 337 1077 Antisense
Sequence Source Affymetrix Proprietary Database