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[191864_s_at]

Description D2092.1 /REP_DB=WormBase Gene ID /WP=CE09100 /CHR=1 /FEA=Sanger Annotation /DEF=C2 domain-containing protein (ST.LOUIS) TR:P91199 protein_id:AAB42222.1
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 72      6grp_total > 71      4grp_total > 47      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 416
1 2 3 4 range
A 521.8
(3)
P 		209.5
(-3)
P 		263
(-2)
P 		284
(-1.6)
P 		312
B 417.6
(3)
P 		322.4
(-0.5)
P 		269.4
(-2.5)
P 		256
(-3)
P 		162
C 625.4
(3)
P 		315.6
(-2.2)
P 		304.7
(-2.4)
P 		266.4
(-3)
P 		359
avr 521.6
(3) 		282.5
(-2.7) 		279
(-2.8) 		268.8
(-3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 347.5
(-2.7)
P 		492
(3)
P 		339.6
(-3)
P 		432.5
(0.7)
P 		398.3
(-0.7)
P 		394.3
(-0.8)
P 		152
B 284.2
(-3)
P 		361.1
(0.8)
P 		405.9
(3)
P 		376.4
(1.5)
P 		380.3
(1.7)
P 		305.9
(-1.9)
P 		122
C 305.7
(-3)
P 		459.7
(0.7)
P 		446.1
(0.4)
P 		556.5
(3)
P 		353.3
(-1.9)
P 		369.8
(-1.5)
P 		251
avr 312.5
(-3) 		437.6
(2.3) 		397.2
(0.6) 		455.1
(3) 		377.3
(-0.3) 		356.7
(-1.1) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 190
(3)
P 		45.5
(-2.8)
P 		68.7
(-1.9)
P 		41.6
(-3)
P 		148
B 133.2
(3)
P 		79.6
(-1.1)
P 		62.4
(-2.4)
P 		54.5
(-3)
P 		79
C 207
(3)
P 		90.7
(-1.3)
P 		106.2
(-0.7)
P 		44.9
(-3)
P 		162
avr 176.7
(3) 		71.9
(-1.8) 		79.1
(-1.5) 		47
(-3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 64.1
(-3)
P 		175
(3)
P 		74
(-2.5)
P 		109.7
(-0.5)
P 		120.2
(0)
P 		96
(-1.3)
P 		111
B 98.9
(-3)
P 		120.2
(-0.7)
P 		98.6
(-3)
P 		99.7
(-2.9)
P 		154.5
(3)
P 		114.1
(-1.3)
P 		56
C 113.3
(-2.7)
P 		140.3
(3)
P 		113.5
(-2.7)
P 		111.9
(-3)
P 		114.3
(-2.5)
P 		123.8
(-0.5)
P 		28
avr 92.1
(-3) 		145.2
(3) 		95.4
(-2.6) 		107.1
(-1.3) 		129.7
(1.2) 		111.3
(-0.8) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191864_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.829
Sequence Type Exemplar sequence
Representative Public ID D2092.1 NCBI
Target Description D2092.1 /REP_DB=WormBase Gene ID /WP=CE09100 /CHR=1 /FEA=Sanger Annotation /DEF=C2 domain-containing protein (ST.LOUIS) TR:P91199 protein_id:AAB42222.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059507(11), NM_059508(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059507 NCBI Caenorhabditis elegans D2092.1b (D2092.1) mRNA, complete cds. 11/11 A 
NM_059508 NCBI Caenorhabditis elegans D2092.1a (D2092.1) mRNA, complete cds. 11/11 None
D2092.1b ENSEMBL cdna:known chromosome:CEL140:I:6637893:6645563:-1 gene:D2092.1 11/11 A 
D2092.1a ENSEMBL cdna:known chromosome:CEL140:I:6638040:6641625:-1 gene:D2092.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6637968-6641554(-) 100.0 100.0
Public Domain and Genome References
Ensembl D2092.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68288 Hypothetical protein D2092.1b [Caenorhabditis elegans] ref|NP_491908.1| D2092.1b [Caenorhabditis elegans] 0.0
blast AAB42222 Hypothetical protein D2092.1a [Caenorhabditis elegans] ref|NP_491909.1| D2092.1a [Caenorhabditis elegans] 0.0
blast CAE67249 Hypothetical protein CBG12689 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 2.5E-26
Pfam IPR000008 EMBL-EBI C2 domain 2.5E-13
Pfam IPR000008 EMBL-EBI C2 domain 3.8E-23
Pfam IPR000008 EMBL-EBI C2 domain 2.5E-26
Pfam IPR000008 EMBL-EBI C2 domain 2.5E-13
Pfam IPR000008 EMBL-EBI C2 domain 3.8E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491908.1 2 723-745,814-836
NP_491909.1 2 637-659,728-750
D2092.1b 2 723-745,814-836
D2092.1a 2 637-659,728-750
Sequence
Target Sequence 
>C. ELEGANS:191864_S_AT
gttgtgaatgttcttgccagctacaaaaatcaaatggaatatcttctttcatggcattct
aagccaaagtccttgacagcctatgtgatcttcatgctgtttgtctactacttccaaatc
tacttcattccgctgatgattttagctttatttggatacaacttcatattgtccaagacg
tctggagacatatctgattcaccaagcagacattctctcaaggggcaaaaaagtgaagaa
gaagatgaaaagacaggaacaggaatccgtgatgcaattagttcagttcaggagatctta
ctttccgttcaatcatatcttcattttgctactcaactcctccaaaaaatcaaaaataca
ttcaatttcactgatatctggttatcaactcttgcagttattgtcctatcacttgcattt
gttcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTGAATGTTCTTGCCAGCTACA 575 437 1819 Antisense
AATATCTTCTTTCATGGCATTCTAA 529 173 1856 Antisense
GTCCTTGACAGCCTATGTGATCTTC 218 477 1887 Antisense
GTGATCTTCATGCTGTTTGTCTACT 162 485 1903 Antisense
TGTCTACTACTTCCAAATCTACTTC 180 557 1920 Antisense
AATCTACTTCATTCCGCTGATGATT 64 171 1935 Antisense
GATTCACCAAGCAGACATTCTCTCA 419 431 2014 Antisense
GAGATCTTACTTTCCGTTCAATCAT 277 397 2110 Antisense
ATCTTCATTTTGCTACTCAACTCCT 18 31 2135 Antisense
ACTCTTGCAGTTATTGTCCTATCAC 249 101 2206 Antisense
GTCCTATCACTTGCATTTGTTCTTC 254 477 2221 Antisense
Sequence Source Affymetrix Proprietary Database