[Home] | [Total List]

[191863_at]

Description C33F10.7 /REP_DB=WormBase Gene ID /WP=CE04140 /TR=Q18384 /GB=AAK31475.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=esterase and beta-lactamase
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 03      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 70      6grp_total > 35      4grp_total > 43      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 273.9
(-0.1)
P 		321.6
(3)
P 		230.4
(-3)
P 		267.2
(-0.6)
P 		91
B 290
(1.3)
P 		302.8
(2.9)
P 		256
(-3)
P 		303.2
(3)
P 		47
C 308.6
(-0.3)
P 		382.2
(3)
P 		357.9
(1.9)
P 		247.1
(-3)
P 		135
avr 290.8
(-1.3) 		335.5
(3) 		281.4
(-2.2) 		272.5
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 404.5
(3)
P 		377.1
(2.1)
P 		256.3
(-2)
P 		284.1
(-1.1)
P 		228.4
(-3)
P 		307.6
(-0.3)
P 		176
B 363.6
(3)
P 		360.1
(2.8)
P 		353.9
(2.5)
P 		261.1
(-2.7)
P 		255.4
(-3)
P 		270.3
(-2.2)
P 		108
C 380.8
(3)
P 		323.6
(0.3)
P 		363.9
(2.2)
P 		270.3
(-2.1)
P 		251.6
(-3)
P 		284.8
(-1.5)
P 		129
avr 383
(3) 		353.6
(1.7) 		324.7
(0.5) 		271.8
(-1.8) 		245.1
(-3) 		287.6
(-1.2) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 99.7
(3)
P 		69.8
(0)
P 		60.2
(-0.9)
P 		39.1
(-3)
P 		61
B 92.5
(3)
P 		74.8
(-0.2)
P 		59.3
(-3)
P 		64.6
(-2)
P 		33
C 102.2
(1.4)
P 		109.9
(1.9)
P 		124.7
(3)
P 		41.7
(-3)
P 		83
avr 98.1
(3) 		84.8
(1.4) 		81.4
(1) 		48.5
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 74.6
(-1.6)
P 		134.1
(3)
P 		55.8
(-3)
P 		72.1
(-1.8)
P 		68.9
(-2)
P 		74.9
(-1.5)
P 		78
B 126.5
(3)
P 		119.9
(2.3)
P 		85.9
(-1.2)
P 		69.1
(-3)
P 		103.8
(0.6)
P 		100.8
(0.3)
P 		57
C 141.1
(3)
P 		98.7
(0.1)
P 		92.6
(-0.4)
P 		54.4
(-3)
P 		81.4
(-1.1)
P 		95.3
(-0.2)
P 		87
avr 114.1
(2.6) 		117.6
(3) 		78.1
(-1.5) 		65.2
(-3) 		84.7
(-0.8) 		90.3
(-0.1) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191863_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4084
Sequence Type Exemplar sequence
Representative Public ID C33F10.7 NCBI
Target Description C33F10.7 /REP_DB=WormBase Gene ID /WP=CE04140 /TR=Q18384 /GB=AAK31475.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=esterase and beta-lactamase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026844 NCBI Caenorhabditis elegans C33F10.7a (C33F10.7) mRNA, complete cds. 11/11 None
SNAP00000016468 ENSEMBL cdna:SNAP chromosome:CEL140:II:4818649:4820816:-1 11/11 None
GENEFINDER00000016478 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4818649:4820816:-1 11/11 None
C33F10.7a ENSEMBL cdna:known chromosome:CEL140:II:4818649:4821551:-1 gene:C33F10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026845 8/11 Cross Hyb Matching Probes None
C33F10.7b.2 8/11 Cross Hyb Matching Probes None
C33F10.7b.1 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
183166 2 1 NM_001026844 191863_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4818647-4821550(-) 100.0 100.0
Public Domain and Genome References
Ensembl C33F10.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022015 C33F10.7a [Caenorhabditis elegans] gb|AAK31475.1| Hypothetical protein C33F10.7a [Caenorhabditis elegans] 0.0
blast CAE73201 Hypothetical protein CBG20604 [Caenorhabditis briggsae] 0.0
blast NP_001022016 C33F10.7b [Caenorhabditis elegans] gb|AAV58880.1| Hypothetical protein C33F10.7b [Caenorhabditis elegans] 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR001466 EMBL-EBI Beta-lactamase 1.3E-80
Pfam IPR001466 EMBL-EBI Beta-lactamase 1.3E-80
Sequence
Target Sequence 
>C. ELEGANS:191863_AT
gctagactattcaagtgccctgcaactcttgttagccgagaaatcgcctatgatcgttcg
atcttgaaactagctcgatactactacaatccacgtggcctgttcgcagcagccagacgg
aatctgagtcttcatggatctgacttcacaatgtttaataatagtgatttgagagtagtt
gggcagcctgcagtcaatggaattgggtcagcgagagcaatggcacagttacaccagcta
gttcttgatgggacacttctttcgaaggagacttttgatataatcaaacatcctcgaaaa
atgacatcttttgactatctcatcggcgagcctcagaataaggagcacggctttacatat
ttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTAGACTATTCAAGTGCCCTGCAA 568 301 736 Antisense
CCCTGCAACTCTTGTTAGCCGAGAA 138 261 753 Antisense
AAATCGCCTATGATCGTTCGATCTT 257 119 776 Antisense
TACTACTACAATCCACGTGGCCTGT 570 643 814 Antisense
GTTCGCAGCAGCCAGACGGAATCTG 709 441 837 Antisense
GGGCAGCCTGCAGTCAATGGAATTG 701 491 916 Antisense
GCACAGTTACACCAGCTAGTTCTTG 69 317 958 Antisense
GTTCTTGATGGGACACTTCTTTCGA 152 445 976 Antisense
GACATCTTTTGACTATCTCATCGGC 189 371 1038 Antisense
CTATCTCATCGGCGAGCCTCAGAAT 545 223 1050 Antisense
AGGAGCACGGCTTTACATATTTCAA 668 55 1076 Antisense
Sequence Source Affymetrix Proprietary Database