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[191862_at]

Description K06H7.3 /REP_DB=WormBase Gene ID /WP=CE26941 /GB=AAF99988.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Isopentenyl-diphosphate delta isomerase
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 72      6grp_total > 09      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 0      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 377.6
(3)
P 		354.8
(0.7)
P 		329.3
(-1.9)
P 		318.9
(-3)
P 		59
B 420.2
(3)
P 		279.6
(-1.5)
P 		297.8
(-0.9)
P 		231.1
(-3)
P 		189
C 435.8
(3)
P 		298.1
(-3)
P 		320.2
(-2)
P 		350.6
(-0.7)
P 		138
avr 411.2
(3) 		310.8
(-2.4) 		315.8
(-2.2) 		300.2
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 469.9
(2.3)
P 		384.4
(-1.2)
P 		488.1
(3)
P 		424.7
(0.5)
P 		338.7
(-3)
P 		365.4
(-1.9)
P 		149
B 398.2
(0.3)
P 		406.3
(0.6)
P 		322.9
(-3)
P 		353.2
(-1.7)
P 		461.5
(3)
P 		433.4
(1.8)
P 		139
C 434
(0.1)
P 		390.3
(-3)
P 		399.4
(-2.4)
P 		475.9
(3)
P 		402.6
(-2.1)
P 		451.6
(1.3)
P 		86
avr 434
(3) 		393.7
(-3) 		403.5
(-1.5) 		417.9
(0.6) 		400.9
(-1.9) 		416.8
(0.4) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 137.5
(3)
P 		77
(-1)
P 		86.1
(-0.4)
P 		46.7
(-3)
P 		91
B 134
(3)
P 		69.1
(-1.6)
P 		69
(-1.6)
P 		49.3
(-3)
P 		85
C 144.3
(3)
P 		85.7
(-1.1)
P 		111.6
(0.7)
P 		59.1
(-3)
P 		85
avr 138.6
(3) 		77.3
(-1.2) 		88.9
(-0.4) 		51.7
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 86.6
(-3)
P 		136.7
(3)
P 		106.3
(-0.6)
P 		107.7
(-0.5)
P 		102.2
(-1.1)
P 		89
(-2.7)
P 		50
B 138.6
(0.3)
P 		135.2
(0.1)
P 		78.4
(-3)
P 		93.6
(-2.2)
P 		187.5
(3)
P 		161.6
(1.6)
P 		109
C 160.9
(3)
P 		119.1
(-0.8)
P 		101.7
(-2.4)
P 		95.7
(-3)
P 		130.3
(0.2)
P 		151.2
(2.1)
P 		65
avr 128.7
(1.5) 		130.3
(1.7) 		95.5
(-3) 		99
(-2.5) 		140
(3) 		133.9
(2.2) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6844
Sequence Type Exemplar sequence
Representative Public ID K06H7.3 NCBI
Target Description K06H7.3 /REP_DB=WormBase Gene ID /WP=CE26941 /GB=AAF99988.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Isopentenyl-diphosphate delta isomerase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066365 NCBI Caenorhabditis elegans Isopentenyl Diphosphate Isomerase family member (idi-1) (idi-1) mRNA, complete cds. 11/11 None
SNAP00000036733 ENSEMBL cdna:SNAP chromosome:CEL140:III:8091633:8092661:1 9/11 None
GENEFINDER00000036739 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8091633:8092842:1 11/11 None
K06H7.9 ENSEMBL cdna:known chromosome:CEL140:III:8091627:8092963:1 gene:K06H7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8088458-8092840(+) 97.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol idi-1
Ensembl K06H7.9
Entrez Gene 176142 Entrez gene
SwissProt Q9BI81 EMBL-EBI
WormBase CE26944 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
8299 isoprenoid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4452 isopentenyl-diphosphate delta-isomerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18968 Isopentenyl diphosphate isomerase protein 1 [Caenorhabditis elegans] ref|NP_498766.1| Isopentenyl Diphosphate Isomerase family member (idi-1) [Caenorhabditis elegans] gb|AAT08468.1| isopentenyl-diphosphate isomerase [Caenorhabditis elegans] 1.0E-126
blast AAK18968 Isopentenyl diphosphate isomerase protein 1 [Caenorhabditis elegans] ref|NP_498766.1| Isopentenyl Diphosphate Isomerase family member (idi-1) [Caenorhabditis elegans] gb|AAT08468.1| isopentenyl-diphosphate isomerase [Caenorhabditis elegans] 1.0E-100
blast CAE75055 Hypothetical protein CBG22969 [Caenorhabditis briggsae] 1.0E-89
blast CAE75055 Hypothetical protein CBG22969 [Caenorhabditis briggsae] 5.0E-73
blast CAD37150 isopentenyl-diphosphate delta-isomerase [Aspergillus fumigatus] 1.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 2.7E-14
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 5.2E-12
Sequence
Target Sequence 
>C. ELEGANS:191862_AT
tcaattggttcttcatcgtgcgttctccgtattttcattcacatcagataacaaattact
aatgcaaaaaagaagtgcagaaaagatcacatttccaaacttgtggaccaacacatgctg
tagtcacccattgcatacacaacaagaaatggacggagttcctggagccaagagagcagc
aatcagaaaactcgaacacgaattaggaattactggagtgtcactcaataaatttcaaat
ggctggaaaatatatttatcgtgctgaaatgaacaatgctccatggggagagcatgagtt
ggactatgcgcttattttgaggggaattggagcagaaaattgtaatattaatgaaaatga
ggtggcagaagtgagagaagtcgtattggatgagctcaaattatggatgagaaaagaacc
aaattccttcacgccgtggctcaagctgttctcacaaactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTGGTTCTTCATCGTGCGTTC 650 633 2037 Antisense
GATCACATTTCCAAACTTGTGGACC 510 421 2121 Antisense
GGACCAACACATGCTGTAGTCACCC 28 519 2141 Antisense
GTAGTCACCCATTGCATACACAACA 268 457 2156 Antisense
AATGGACGGAGTTCCTGGAGCCAAG 298 161 2184 Antisense
TGGAGCCAAGAGAGCAGCAATCAGA 486 547 2199 Antisense
TAGGAATTACTGGAGTGTCACTCAA 282 653 2240 Antisense
GAAATGAACAATGCTCCATGGGGAG 708 357 2302 Antisense
GAGTTGGACTATGCGCTTATTTTGA 379 397 2332 Antisense
GAGAAAAGAACCAAATTCCTTCACG 472 387 2445 Antisense
GGCTCAAGCTGTTCTCACAAACTGA 540 537 2474 Antisense
Sequence Source Affymetrix Proprietary Database