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[191860_at] sodium/proline symporter like

Description ZK822.5 /REP_DB=WormBase Gene ID /WP=CE18466 /TR=Q23616 /GB=CAA98070.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=sodium-proline symporter like
Cluster 6grp_high1_10_10 > 37      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_total > 45      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1001
1 2 3 4 range
A 820.2
(0.4)
P 		411.6
(-2.1)
P 		260.5
(-3)
P 		1261.9
(3)
P 		1001
B 702.6
(0.4)
P 		451.2
(-2.1)
P 		357.5
(-3)
P 		970.8
(3)
P 		613
C 801
(1)
P 		565
(-1.2)
P 		376.1
(-3)
P 		1018
(3)
P 		642
avr 774.6
(0.5) 		475.9
(-1.8) 		331.4
(-3) 		1083.6
(3) 		752

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 454
(2.7)
P 		397.6
(1.3)
P 		401.3
(1.4)
P 		316.9
(-0.6)
M 		219.6
(-3)
P 		466.6
(3)
P 		247
B 556.2
(3)
P 		351.7
(-1.9)
P 		541.7
(2.7)
P 		305.8
(-3)
P 		315.7
(-2.8)
P 		447.3
(0.4)
P 		250
C 448.5
(2.1)
P 		369.1
(0.3)
P 		441.6
(1.9)
P 		455.9
(2.3)
M 		227.8
(-3)
P 		487.1
(3)
P 		259
avr 486.2
(3) 		372.8
(0.1) 		461.5
(2.4) 		359.5
(-0.3) 		254.4
(-3) 		467
(2.5) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 298.6
(3)
P 		89.3
(-2.4)
P 		68.1
(-3)
P 		184.7
(0)
P 		231
B 224.1
(3)
P 		111.4
(-1.8)
P 		82.8
(-3)
P 		206.9
(2.3)
P 		141
C 265.2
(3)
P 		162.4
(-1.6)
P 		131.1
(-3)
P 		171.7
(-1.2)
P 		134
avr 262.6
(3) 		121
(-2) 		94
(-3) 		187.8
(0.3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 83.7
(-1.6)
P 		141.4
(3)
P 		87.4
(-1.3)
P 		80.4
(-1.9)
M 		66.3
(-3)
P 		113.6
(0.8)
P 		75
B 193.5
(3)
P 		117.1
(-1.1)
P 		131.5
(-0.3)
P 		81
(-3)
P 		128.2
(-0.5)
P 		166.8
(1.6)
P 		113
C 166.2
(3)
P 		112.6
(-0.5)
P 		112.4
(-0.5)
P 		91.7
(-1.8)
M 		73.7
(-3)
P 		163.1
(2.8)
P 		93
avr 147.8
(3) 		123.7
(0.7) 		110.4
(-0.5) 		84.4
(-3) 		89.4
(-2.5) 		147.8
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10303
Sequence Type Exemplar sequence
Representative Public ID ZK822.5 NCBI
Target Description ZK822.5 /REP_DB=WormBase Gene ID /WP=CE18466 /TR=Q23616 /GB=CAA98070.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=sodium-proline symporter like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069861(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069861 NCBI Caenorhabditis elegans ZK822.5 (ZK822.5) mRNA, complete cds. 11/11 None
SNAP00000037319 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11937389:11940478:1 11/11 None
GENEFINDER00000037321 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11937389:11940478:1 11/11 None
ZK822.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:11937381:11940563:1 gene:ZK822.5 11/11 None
ZK822.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:11937388:11940563:1 gene:ZK822.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11937394-11940484(+) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/proline symporter like
Ensembl ZK822.5
Entrez Gene 178127 Entrez gene
SwissProt Q23616 EMBL-EBI
WormBase CE18466 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604187_S_AT similar to solute carrier family 5 (sodium-dependent vitamin transporter), member 6 cfa
CANINE:1604186_AT similar to solute carrier family 5 (sodium-dependent vitamin transporter), member 6 cfa
CANINE:1596934_AT similar to solute carrier family 5 (sodium-dependent vitamin transporter), member 6 cfa
CANINE_2:CFA.14178.1.S1_AT similar to solute carrier family 5 (sodium-dependent vitamin transporter), member 6 cfa
CANINE_2:CFAAFFX.8177.1.S1_AT similar to solute carrier family 5 (sodium-dependent vitamin transporter), member 6 cfa
HG-U133_PLUS_2:204087_S_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
HG-U133A:204087_S_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
HG-FOCUS:204087_S_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
HG-U133A_2:204087_S_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
HU35KSUBB:RC_R96614_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
HU35KSUBB:RC_N30242_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
HU35KSUBD:RC_T77525_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
U133_X3P:G10863878_3P_S_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
U133_X3P:G10863878_3P_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
U133_X3P:204087_3P_S_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
HG-U95AV2:35256_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
HG-U95B:43605_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
HU35KSUBC:RC_D19785_AT Solute carrier family 5 (sodium-dependent vitamin transporter), member 6 hs
MU11KSUBA:AA563404_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 mm
MG-U74AV2:104200_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 mm
MG-U74BV2:105511_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 mm
MOE430A:1435860_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 mm
MOUSE430A_2:1435860_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 mm
MOUSE430_2:1435860_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 mm
MU19KSUBC:TC36173_AT Solute carrier family 5 (sodium-dependent vitamin transporter), member 6, mRNA (cDNA clone MGC:109689 IMAGE:6416422) mm
RG-U34A:AF081204_S_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 rn
RG-U34A:AF026554_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 rn
RAE230A:1367815_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 rn
RAT230_2:1367815_AT solute carrier family 5 (sodium-dependent vitamin transporter), member 6 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98070 Hypothetical protein ZK822.5 [Caenorhabditis elegans] ref|NP_502262.1| ZK822.5 [Caenorhabditis elegans] 0.0
blast CAE62149 Hypothetical protein CBG06195 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001734 EMBL-EBI Na+/solute symporter 7.1E-14
Pfam IPR001734 EMBL-EBI Na+/solute symporter 1.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502262.1 11 15-37,58-78,88-110,131-153,168-190,249-271,286-308,393-415,420-442,449-471,517-539
ZK822.5.1 11 15-37,58-78,88-110,131-153,168-190,249-271,286-308,393-415,420-442,449-471,517-539
ZK822.5.2 11 15-37,58-78,88-110,131-153,168-190,249-271,286-308,393-415,420-442,449-471,517-539
SNAP00000037319 9 15-37,58-80,95-117,154-176,191-213,298-320,325-347,354-376,422-444
GENEFINDER00000037321 11 15-37,58-78,88-110,131-153,168-190,249-271,286-308,393-415,420-442,449-471,517-539
Sequence
Target Sequence 
>C. ELEGANS:191860_AT
tgtgggttgagctcaactggccttgcattccttgctgaagttcttggaggaagtcttcgt
atttgcatatctgtaatgggagcaatgtctggtccaatggttgctatattcgtattagct
ctttttttcccaaagagcggatcaaaatcatgtctcatctcattttttctttcgaatctc
ttctgtttaattatttgcattgccaattacatccaagatccataccacgatctctttctt
ccaacgaatactaccttggaaggatgtaatggaaattcaaactttacgatacgtatgatg
ccaacttatgatgctcattatggaaatccggatactttgtacatttcaagaatatccacg
tattcttacgcaggagtcggctttgtacttatgatcatcatcggatggatcgcctcactt
ttcgaagagtctgatcataaagttgagaagatccgacatttaacattttctggcagaaac
gagccctggccagatacacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGGTTGAGCTCAACTGGCCTTG 357 553 1210 Antisense
GCCTTGCATTCCTTGCTGAAGTTCT 566 281 1229 Antisense
CAATGTCTGGTCCAATGGTTGCTAT 673 181 1292 Antisense
GGATCAAAATCATGTCTCATCTCAT 458 511 1348 Antisense
TCATTTTTTCTTTCGAATCTCTTCT 292 619 1369 Antisense
ATTACATCCAAGATCCATACCACGA 354 11 1415 Antisense
CGATCTCTTTCTTCCAACGAATACT 257 249 1437 Antisense
GTATTCTTACGCAGGAGTCGGCTTT 120 447 1569 Antisense
GTCGGCTTTGTACTTATGATCATCA 160 473 1585 Antisense
ATCATCATCGGATGGATCGCCTCAC 168 31 1603 Antisense
AAACGAGCCCTGGCCAGATACACAT 188 127 1686 Antisense
Sequence Source Affymetrix Proprietary Database