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[191858_s_at] possible RNA binding protein

Description ZK418.8 /REP_DB=WormBase Gene ID /WP=CE00810 /TR=Q23486 /GB=AAA50692.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=possible RNA binding protein
Cluster 6grp_total > 96      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 14.7
(-3)
A 		76.8
(3)
P 		43.6
(-0.2)
A 		58
(1.2)
A 		62
B 22.5
(-2.4)
A 		15.3
(-3)
A 		66.3
(1.5)
A 		84
(3)
P 		69
C 28.8
(-3)
A 		56.7
(1)
A 		56.6
(0.9)
A 		71.1
(3)
P 		42
avr 22
(-3) 		49.6
(0.4) 		55.5
(1.1) 		71
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 20.2
(-2.9)
A 		16.8
(-3)
A 		63.9
(-1.6)
A 		117.6
(-0.1)
P 		225.2
(3)
P 		187.1
(1.9)
P 		208
B 27.8
(-2.7)
A 		17.1
(-3)
A 		50.6
(-2.2)
P 		95.1
(-1.2)
P 		184
(1)
P 		270.5
(3)
P 		253
C 32
(-2.8)
A 		20.7
(-3)
A 		52.2
(-2.4)
A 		117.1
(-1.2)
P 		220.2
(0.8)
P 		339.4
(3)
P 		319
avr 26.7
(-2.8) 		18.2
(-3) 		55.6
(-2.1) 		109.9
(-0.8) 		209.8
(1.6) 		265.7
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.4
(-3)
A 		16.7
(3)
P 		11.4
(0.2)
A 		8.5
(-1.4)
A 		11
B 7.2
(-1.6)
A 		3.8
(-3)
A 		15.4
(1.9)
A 		17.9
(3)
P 		14
C 9.5
(-3)
A 		16.3
(1)
A 		19.7
(3)
A 		12
(-1.5)
P 		10
avr 7.4
(-3) 		12.3
(0.6) 		15.5
(3) 		12.8
(1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 3.7
(-3)
A 		6
(-2.8)
A 		13.9
(-2)
A 		29.8
(-0.6)
P 		68
(3)
P 		45.6
(0.9)
P 		64
B 9.7
(-2.7)
A 		5.7
(-3)
A 		12.3
(-2.6)
P 		25.2
(-1.8)
P 		74.7
(1.3)
P 		100.9
(3)
P 		95
C 11.9
(-2.7)
A 		6.3
(-3)
A 		13.3
(-2.6)
A 		23.5
(-2)
P 		71.3
(0.6)
P 		113.6
(3)
P 		107
avr 8.4
(-2.8) 		6
(-3) 		13.2
(-2.5) 		26.2
(-1.5) 		71.3
(1.9) 		86.7
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191858_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8036
Sequence Type Exemplar sequence
Representative Public ID ZK418.8 NCBI
Target Description ZK418.8 /REP_DB=WormBase Gene ID /WP=CE00810 /TR=Q23486 /GB=AAA50692.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=possible RNA binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066146 NCBI Caenorhabditis elegans ZK418.8 (ZK418.8) mRNA, complete cds. 11/11 None
SNAP00000003346 ENSEMBL cdna:SNAP chromosome:CEL140:III:7083791:7084917:-1 11/11 None
GENEFINDER00000003354 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7083791:7084917:-1 11/11 None
ZK418.8 ENSEMBL cdna:known chromosome:CEL140:III:7083671:7084917:-1 gene:ZK418.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7083788-7084915(-) 100.0 100.0
Public Domain and Genome References
Gene Title possible RNA binding protein
Ensembl ZK418.8
Entrez Gene 175988 Entrez gene
SwissProt Q23486 EMBL-EBI
WormBase CE00810 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50692 Hypothetical protein ZK418.8 [Caenorhabditis elegans] ref|NP_498547.1| ZK418.8 [Caenorhabditis elegans] 1.0E-157
blast CAE70078 Hypothetical protein CBG16519 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 9.5E-6
Pfam IPR004087 EMBL-EBI KH 4.9E-13
Sequence
Target Sequence 
>C. ELEGANS:191858_S_AT
tgcgttctaagatcgtacacaccggaggagttggatgtcgctagcaatgaagtctctgcc
gacgccgaatggacggaacagttccaaaatgaggattggtttggcgaagaatccacggac
acgcgtcgaaaaatcacttatctactggttcgcgcaacagatgagcaatgcgttaaatta
gtccgattgagaatcgcggaaattattgacaatgttcagaagccttggaagactgcagag
ttcgaagtggaaactcaaatggtcggatatcttgtcgggcgtggcggtcgtcatattaaa
accctccgtgataagttttccgtcaatatccaaatttccgatccaattcctgatgatccg
acaagatctttggtaactgttcgtgggcgggacctgacagctctgaaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGTTCTAAGATCGTACACACCGG 672 551 274 Antisense
ACCGGAGGAGTTGGATGTCGCTAGC 104 89 294 Antisense
CTCTGCCGACGCCGAATGGACGGAA 674 231 327 Antisense
GGCGAAGAATCCACGGACACGCGTC 438 539 376 Antisense
AAAATCACTTATCTACTGGTTCGCG 527 131 403 Antisense
AATGGTCGGATATCTTGTCGGGCGT 565 161 531 Antisense
GTCGTCATATTAAAACCCTCCGTGA 348 469 560 Antisense
CCTCCGTGATAAGTTTTCCGTCAAT 494 263 576 Antisense
ATCCAATTCCTGATGATCCGACAAG 314 41 614 Antisense
GATCTTTGGTAACTGTTCGTGGGCG 495 415 638 Antisense
GCGGGACCTGACAGCTCTGAAAGAA 252 293 660 Antisense
Sequence Source Affymetrix Proprietary Database